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neuroinformatics-unit · Mar 15, 2024 · 3b641d4 · 3b641d4
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ce414a2ba73a00c5a7f97cc1fa7502a7
+config: f6df9384d32fb68c581cf43779b8c432
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.doctrees/community/contributing.doctree b/.doctrees/community/contributing.doctree
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/examples/filter_and_interpolate.doctree b/.doctrees/examples/filter_and_interpolate.doctree
diff --git a/.doctrees/examples/load_and_explore_poses.doctree b/.doctrees/examples/load_and_explore_poses.doctree
diff --git a/.doctrees/examples/sg_execution_times.doctree b/.doctrees/examples/sg_execution_times.doctree
diff --git a/.doctrees/sg_execution_times.doctree b/.doctrees/sg_execution_times.doctree
diff --git a/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip b/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip
diff --git a/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip b/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip
diff --git a/_images/binder_badge_logo.svg b/_images/binder_badge_logo.svg
diff --git a/_modules/index.html b/_modules/index.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/analysis/kinematics.html b/_modules/movement/analysis/kinematics.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/filtering.html b/_modules/movement/filtering.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/io/load_poses.html b/_modules/movement/io/load_poses.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/io/save_poses.html b/_modules/movement/io/save_poses.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/io/validators.html b/_modules/movement/io/validators.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/logging.html b/_modules/movement/logging.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/move_accessor.html b/_modules/movement/move_accessor.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_modules/movement/sample_data.html b/_modules/movement/sample_data.html
@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/_sources/examples/filter_and_interpolate.rst.txt b/_sources/examples/filter_and_interpolate.rst.txt
@@ -11,7 +11,7 @@
         :class: sphx-glr-download-link-note
 
         :ref:`Go to the end <sphx_glr_download_examples_filter_and_interpolate.py>`
-        to download the full example code
+        to download the full example code or to run this example in your browser via Binder
 
 .. rst-class:: sphx-glr-example-title
 
@@ -118,7 +118,7 @@ Visualise the pose tracks
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f7af4446050>
+    <xarray.plot.facetgrid.FacetGrid object at 0x75db25e74610>
 
 
 
@@ -200,7 +200,7 @@ they evolve over time.
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f7af67d6450>
+    <xarray.plot.facetgrid.FacetGrid object at 0x75db27f4b390>
 
 
 
@@ -278,7 +278,7 @@ We can see that the filtering operation has introduced NaN values in the
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f7af66e9990>
+    <xarray.plot.facetgrid.FacetGrid object at 0x75db25acac10>
 
 
 
@@ -361,7 +361,7 @@ indeed shorter than 1 second. Let's visualise the interpolated pose tracks
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f7aea168e10>
+    <xarray.plot.facetgrid.FacetGrid object at 0x75db2477d250>
 
 
 
@@ -391,16 +391,16 @@ applied to the data.
 
  .. code-block:: none
 
-    {'operation': 'filter_by_confidence', 'datetime': '2024-03-12 15:17:14.490904', 'threshold': 0.6, 'print_report': True}
-    {'operation': 'interpolate_over_time', 'datetime': '2024-03-12 15:17:16.005184', 'method': 'linear', 'max_gap': 1, 'print_report': True}
+    {'operation': 'filter_by_confidence', 'datetime': '2024-03-15 08:44:34.864829', 'threshold': 0.6, 'print_report': True}
+    {'operation': 'interpolate_over_time', 'datetime': '2024-03-15 08:44:36.324135', 'method': 'linear', 'max_gap': 1, 'print_report': True}
 
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 3.400 seconds)
+   **Total running time of the script:** (0 minutes 3.330 seconds)
 
 
 .. _sphx_glr_download_examples_filter_and_interpolate.py:
@@ -409,6 +409,13 @@ applied to the data.
 
   .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: binder-badge
+
+      .. image:: images/binder_badge_logo.svg
+        :target: https://mybinder.org/v2/gh/neuroinformatics-unit/movement/gh-pages?filepath=notebooks/examples/filter_and_interpolate.ipynb
+        :alt: Launch binder
+        :width: 150 px
+
     .. container:: sphx-glr-download sphx-glr-download-jupyter
 
       :download:`Download Jupyter notebook: filter_and_interpolate.ipynb <filter_and_interpolate.ipynb>`

diff --git a/_sources/examples/load_and_explore_poses.rst.txt b/_sources/examples/load_and_explore_poses.rst.txt
@@ -11,7 +11,7 @@
         :class: sphx-glr-download-link-note
 
         :ref:`Go to the end <sphx_glr_download_examples_load_and_explore_poses.py>`
-        to download the full example code
+        to download the full example code or to run this example in your browser via Binder
 
 .. rst-class:: sphx-glr-example-title
 
@@ -224,7 +224,7 @@ using ``xarray``'s built-in plotting methods:
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f7b108d4510>
+    <xarray.plot.facetgrid.FacetGrid object at 0x75db28552250>
 
 
 
@@ -255,7 +255,7 @@ for all individuals:
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f7af44f7a10>
+    <xarray.plot.facetgrid.FacetGrid object at 0x75db27f02690>
 
 
 
@@ -299,14 +299,14 @@ For example, we can use ``matplotlib`` to plot trajectories
  .. code-block:: none
 
 
-    <matplotlib.colorbar.Colorbar object at 0x7f7af44a58d0>
+    <matplotlib.colorbar.Colorbar object at 0x75db25e7d1d0>
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.718 seconds)
+   **Total running time of the script:** (0 minutes 0.714 seconds)
 
 
 .. _sphx_glr_download_examples_load_and_explore_poses.py:
@@ -315,6 +315,13 @@ For example, we can use ``matplotlib`` to plot trajectories
 
   .. container:: sphx-glr-footer sphx-glr-footer-example
 
+    .. container:: binder-badge
+
+      .. image:: images/binder_badge_logo.svg
+        :target: https://mybinder.org/v2/gh/neuroinformatics-unit/movement/gh-pages?filepath=notebooks/examples/load_and_explore_poses.ipynb
+        :alt: Launch binder
+        :width: 150 px
+
     .. container:: sphx-glr-download sphx-glr-download-jupyter
 
       :download:`Download Jupyter notebook: load_and_explore_poses.ipynb <load_and_explore_poses.ipynb>`

diff --git a/_sources/examples/sg_execution_times.rst.txt b/_sources/examples/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:04.119** total execution time for 2 files **from examples**:
+**00:04.044** total execution time for 2 files **from examples**:
 
 .. container::
 
@@ -33,8 +33,8 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_examples_filter_and_interpolate.py` (``filter_and_interpolate.py``)
-     - 00:03.400
+     - 00:03.330
      - 0.0
    * - :ref:`sphx_glr_examples_load_and_explore_poses.py` (``load_and_explore_poses.py``)
-     - 00:00.718
+     - 00:00.714
      - 0.0
diff --git a/_sources/sg_execution_times.rst.txt b/_sources/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:04.119** total execution time for 2 files **from all galleries**:
+**00:04.044** total execution time for 2 files **from all galleries**:
 
 .. container::
 
@@ -33,8 +33,8 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_examples_filter_and_interpolate.py` (``../../examples/filter_and_interpolate.py``)
-     - 00:03.400
+     - 00:03.330
      - 0.0
    * - :ref:`sphx_glr_examples_load_and_explore_poses.py` (``../../examples/load_and_explore_poses.py``)
-     - 00:00.718
+     - 00:00.714
      - 0.0
diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.0.13',
+    VERSION: '0.0.14',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/api/movement.analysis.kinematics.compute_acceleration.html b/api/movement.analysis.kinematics.compute_acceleration.html
@@ -41,7 +41,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>
 

diff --git a/api/movement.analysis.kinematics.compute_displacement.html b/api/movement.analysis.kinematics.compute_displacement.html
@@ -41,7 +41,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
   <script src="../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=e7e1db34"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=2c684bf9"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -125,7 +125,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.13</p>
+    <p class="title logo__title">movement v0.0.14</p>
 
 </a></div>