deploy: 1d4aba5

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 83fc8b3d93aabf933981e660f670aecf
+config: f3accd61f28ed912573026661e4390b3
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_modules/index.html

@@ -39,7 +39,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -119,7 +119,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

_modules/movement/datasets.html

@@ -39,7 +39,7 @@
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../_static/design-tabs.js?v=36754332"></script>
@@ -119,7 +119,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

_modules/movement/io/load_poses.html

@@ -39,7 +39,7 @@
 <link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../../_static/design-tabs.js?v=36754332"></script>
@@ -119,7 +119,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

_modules/movement/io/save_poses.html

@@ -39,7 +39,7 @@
 <link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../../_static/design-tabs.js?v=36754332"></script>
@@ -119,7 +119,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

_modules/movement/io/validators.html

@@ -39,7 +39,7 @@
 <link rel="preload" as="script" href="../../../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../../../" id="documentation_options" src="../../../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../../_static/design-tabs.js?v=36754332"></script>
@@ -119,7 +119,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

_modules/movement/logging.html

@@ -39,7 +39,7 @@
 <link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../../_static/design-tabs.js?v=36754332"></script>
@@ -119,7 +119,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 
@@ -411,34 +411,37 @@ <h1>Source code for movement.logging</h1><div class="highlight"><pre>
 
     <span class="c1"># Set the log directory and file path</span>
     <span class="n">log_directory</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">log_file</span> <span class="o">=</span> <span class="n">log_directory</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">logger_name</span><span class="si">}</span><span class="s2">.log&quot;</span>
-
-    <span class="c1"># If a logger with the given name is already configured</span>
-    <span class="k">if</span> <span class="n">logger_name</span> <span class="ow">in</span> <span class="n">logging</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">loggerDict</span><span class="p">:</span>
-        <span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="n">logger_name</span><span class="p">)</span>
-        <span class="n">handlers</span> <span class="o">=</span> <span class="n">logger</span><span class="o">.</span><span class="n">handlers</span><span class="p">[:]</span>
-        <span class="c1"># If the log file path has changed</span>
-        <span class="k">if</span> <span class="n">log_file</span><span class="o">.</span><span class="n">as_posix</span><span class="p">()</span> <span class="o">!=</span> <span class="n">handlers</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">baseFilename</span><span class="p">:</span>  <span class="c1"># type: ignore</span>
-            <span class="c1"># remove the handlers to allow for reconfiguration</span>
-            <span class="k">for</span> <span class="n">handler</span> <span class="ow">in</span> <span class="n">handlers</span><span class="p">:</span>
-                <span class="n">logger</span><span class="o">.</span><span class="n">removeHandler</span><span class="p">(</span><span class="n">handler</span><span class="p">)</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="c1"># otherwise, do nothing</span>
-            <span class="k">return</span>
+    <span class="n">log_file</span> <span class="o">=</span> <span class="p">(</span><span class="n">log_directory</span> <span class="o">/</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">logger_name</span><span class="si">}</span><span class="s2">.log&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">as_posix</span><span class="p">()</span>
+
+    <span class="c1"># Check if logger with the given name is already configured</span>
+    <span class="n">logger_configured</span> <span class="o">=</span> <span class="n">logger_name</span> <span class="ow">in</span> <span class="n">logging</span><span class="o">.</span><span class="n">root</span><span class="o">.</span><span class="n">manager</span><span class="o">.</span><span class="n">loggerDict</span>
 
     <span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="n">logger_name</span><span class="p">)</span>
-    <span class="n">logger</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">log_level</span><span class="p">)</span>
 
-    <span class="c1"># Create a rotating file handler</span>
-    <span class="n">max_log_size</span> <span class="o">=</span> <span class="mi">5</span> <span class="o">*</span> <span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span>  <span class="c1"># 5 MB</span>
-    <span class="n">handler</span> <span class="o">=</span> <span class="n">RotatingFileHandler</span><span class="p">(</span><span class="n">log_file</span><span class="p">,</span> <span class="n">maxBytes</span><span class="o">=</span><span class="n">max_log_size</span><span class="p">)</span>
+    <span class="c1"># Logger needs to be (re)configured if unconfigured or</span>
+    <span class="c1"># if configured but the log file path has changed</span>
+    <span class="n">configure_logger</span> <span class="o">=</span> <span class="p">(</span>
+        <span class="ow">not</span> <span class="n">logger_configured</span>
+        <span class="ow">or</span> <span class="n">log_file</span> <span class="o">!=</span> <span class="n">logger</span><span class="o">.</span><span class="n">handlers</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">baseFilename</span>  <span class="c1"># type: ignore</span>
+    <span class="p">)</span>
+
+    <span class="k">if</span> <span class="n">configure_logger</span><span class="p">:</span>
+        <span class="k">if</span> <span class="n">logger_configured</span><span class="p">:</span>
+            <span class="c1"># remove the handlers to allow for reconfiguration</span>
+            <span class="n">logger</span><span class="o">.</span><span class="n">handlers</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+
+        <span class="n">logger</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">log_level</span><span class="p">)</span>
+
+        <span class="c1"># Create a rotating file handler</span>
+        <span class="n">max_log_size</span> <span class="o">=</span> <span class="mi">5</span> <span class="o">*</span> <span class="mi">1024</span> <span class="o">*</span> <span class="mi">1024</span>  <span class="c1"># 5 MB</span>
+        <span class="n">handler</span> <span class="o">=</span> <span class="n">RotatingFileHandler</span><span class="p">(</span><span class="n">log_file</span><span class="p">,</span> <span class="n">maxBytes</span><span class="o">=</span><span class="n">max_log_size</span><span class="p">)</span>
 
-    <span class="c1"># Create a formatter and set it to the handler</span>
-    <span class="n">formatter</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">Formatter</span><span class="p">(</span><span class="n">FORMAT</span><span class="p">)</span>
-    <span class="n">handler</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">formatter</span><span class="p">)</span>
+        <span class="c1"># Create a formatter and set it to the handler</span>
+        <span class="n">formatter</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">Formatter</span><span class="p">(</span><span class="n">FORMAT</span><span class="p">)</span>
+        <span class="n">handler</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">formatter</span><span class="p">)</span>
 
-    <span class="c1"># Add the handler to the logger</span>
-    <span class="n">logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">handler</span><span class="p">)</span></div>
+        <span class="c1"># Add the handler to the logger</span>
+        <span class="n">logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">handler</span><span class="p">)</span></div>
 
 
 <div class="viewcode-block" id="log_error"><a class="viewcode-back" href="../../auto_api/movement.logging.log_error.html#movement.logging.log_error">[docs]</a><span class="k">def</span> <span class="nf">log_error</span><span class="p">(</span><span class="n">error</span><span class="p">,</span> <span class="n">message</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">logger_name</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">&quot;movement&quot;</span><span class="p">):</span>

_sources/auto_examples/load_and_explore_poses.rst.txt

@@ -102,7 +102,7 @@ e.g., ``file_path = "/path/to/my/data.h5"``)
 
  .. code-block:: none
 
-    0.00B [00:00, ?B/s]    34.8kB [00:00, 246kB/s]    0.00B [00:00, ?B/s]        0.00B [00:00, ?B/s]
+    0.00B [00:00, ?B/s]    34.8kB [00:00, 253kB/s]    0.00B [00:00, ?B/s]        0.00B [00:00, ?B/s]
 
 
 
@@ -226,7 +226,7 @@ using ``xarray``'s built-in plotting methods:
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f2817159c50>
+    <xarray.plot.facetgrid.FacetGrid object at 0x7fc24ee1e390>
 
 
 
@@ -257,7 +257,7 @@ for all individuals:
  .. code-block:: none
 
 
-    <xarray.plot.facetgrid.FacetGrid object at 0x7f2815d1a350>
+    <xarray.plot.facetgrid.FacetGrid object at 0x7fc24ea73ad0>
 
 
 
@@ -301,14 +301,14 @@ For example, we can use ``matplotlib`` to plot trajectories
  .. code-block:: none
 
 
-    <matplotlib.colorbar.Colorbar object at 0x7f2813b5f050>
+    <matplotlib.colorbar.Colorbar object at 0x7fc24b938510>
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 1.595 seconds)
+   **Total running time of the script:** (0 minutes 1.882 seconds)
 
 
 .. _sphx_glr_download_auto_examples_load_and_explore_poses.py:

_sources/auto_examples/sg_execution_times.rst.txt

@@ -6,8 +6,8 @@
 
 Computation times
 =================
-**00:01.595** total execution time for **auto_examples** files:
+**00:01.882** total execution time for **auto_examples** files:
 
 +-----------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_load_and_explore_poses.py` (``load_and_explore_poses.py``) | 00:01.595 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_load_and_explore_poses.py` (``load_and_explore_poses.py``) | 00:01.882 | 0.0 MB |
 +-----------------------------------------------------------------------------------------+-----------+--------+

_static/documentation_options.js

@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.0.7',
+    VERSION: '0.0.8',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

api_index.html

@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

auto_api/movement.datasets.fetch_pose_data_path.html

@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

auto_api/movement.datasets.list_pose_data.html

@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

auto_api/movement.io.load_poses.from_dlc_df.html

@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>
 

auto_api/movement.io.load_poses.from_dlc_file.html

@@ -40,7 +40,7 @@
 <link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=ac02cc09edc035673794" />
   <script src="../_static/vendor/fontawesome/6.1.2/js/all.min.js?digest=ac02cc09edc035673794"></script>
 
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=cc9a0d3a"></script>
+    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=6eedfc7d"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/design-tabs.js?v=36754332"></script>
@@ -122,7 +122,7 @@
 
 
 
-    <p class="title logo__title">movement v0.0.7</p>
+    <p class="title logo__title">movement v0.0.8</p>
 
 </a></div>