Remove contrast enhancement

derotation/analysis/full_rotation_pipeline.py

@@ -55,7 +55,6 @@ def __call__(self):
         - adding a circular mask to the rotated image stack
         - saving the masked image stack
         """
-        # self.contrast_enhancement()
         self.process_analog_signals()
         rotated_images = self.rotate_frames_line_by_line()
         masked = self.add_circle_mask(rotated_images, self.mask_diameter)
@@ -172,45 +171,6 @@ def load_data(self):
         logging.info(f"Dataset {self.filename_raw} loaded")
         logging.info(f"Filename: {self.filename}")
 
-    # def contrast_enhancement(self):
-    #     """Applies contrast enhancement to the image stack.
-    #     It is useful to visualize the image stack before derotation.
-    #     """
-    #     logging.info("Applying contrast enhancement...")
-
-    #     self.image_stack = np.array(
-    #         [
-    #             self.contrast_enhancement_single_image(
-    #                 img, self.config["contrast_enhancement"]
-    #             )
-    #             for img in self.image_stack
-    #         ]
-    #     )
-
-    # @staticmethod
-    # def contrast_enhancement_single_image(
-    #     img: np.ndarray, saturated_percentage=0.35
-    # ) -> np.ndarray:
-    #     """Applies contrast enhancement to a single image.
-    #     It is useful to visualize the image stack before derotation.
-
-    #     Parameters
-    #     ----------
-    #     img : np.ndarray
-    #         The image to enhance.
-    #     saturated_percentage : float, optional
-    #         The percentage of saturated pixels, by default 0.35
-
-    #     Returns
-    #     -------
-    #     np.ndarray
-    #         The enhanced image.
-    #     """
-    #     v_min, v_max = np.percentile(
-    #         img, (saturated_percentage, 100 - saturated_percentage)
-    #     )
-    #     return rescale_intensity(img, in_range=(v_min, v_max))
-
     def process_analog_signals(self):
         """From the analog signals (frame clock, line clock, full rotation,
         rotation ticks) calculates the rotation angles by line and frame.