Fix the space case data type to datatype.

datashuttle/command_line_interface.py

@@ -613,7 +613,7 @@ def construct_parser():
         nargs="+",
         type=str,
         required=False,
-        help="Optional: (str, single or multiple) (selection of data types, or 'all')",
+        help="Optional: (str, single or multiple) (selection of datatypes, or 'all')",
     )
     make_sub_folders_parser.add_argument(
         "--datatype",
@@ -663,7 +663,7 @@ def construct_parser():
         type=str,
         nargs="+",
         required=False,
-        help="Optional: (str, single or multiple) (selection of data types, or 'all') (default 'all')",
+        help="Optional: (str, single or multiple) (selection of datatypes, or 'all') (default 'all')",
     )
     upload_parser.add_argument(
         "--dry-run",

datashuttle/configs/canonical_configs.py

@@ -153,7 +153,7 @@ def check_dict_values_raise_on_fail(config_dict: Configs) -> None:
 
     if not any([config_dict[key] for key in get_datatypes()]):
         utils.log_and_raise_error(
-            f"At least one data type must be True in "
+            f"At least one datatype must be True in "
             f"configs, from: {' '.join(get_datatypes())}."
         )
 

datashuttle/configs/config_class.py

@@ -308,7 +308,7 @@ def get_datatype_items(
         self, datatype: Union[str, list]
     ) -> Union[ItemsView, zip]:
         """
-        Get the .items() structure of the data type, either all of
+        Get the .items() structure of the datatype, either all of
         them (stored in self.datatype_folders) or as a single item.
         """
         if isinstance(datatype, str):

datashuttle/datashuttle.py

@@ -313,7 +313,7 @@ def upload(
             be prefixed with "sub-", or the prefix will be
             automatically added. "@*@" can be used as a wildcard.
             "all" will search for all sub-folders in the
-            data type folder to upload.
+            datatype folder to upload.
         ses_names :
             a session name / list of session names, similar to
             sub_names but requiring a "ses-" prefix.

datashuttle/utils/folders.py

@@ -88,7 +88,7 @@ def make_datatype_folders(
 
     Parameters
     ----------
-    datatype : data type (e.g. "behav", "all") to use. Use
+    datatype : datatype (e.g. "behav", "all") to use. Use
         empty string ("") for none.
 
     sub_or_ses_level_path : Full path to the subject
@@ -382,7 +382,7 @@ def search_for_wildcards(
     return new_all_names
 
 
-# Search Data Types
+# Search Datatypes
 # -----------------------------------------------------------------------------
 
 

docs/source/pages/documentation.md

@@ -159,7 +159,7 @@ When the `all` argument is used for `--datatype` (`-dt`), the folders created de
 ```
 
 
-### Data Types Folders
+### Datatype Folders
 
 In [SWC-Blueprint](https://swc-blueprint.neuroinformatics.dev/specification.html), *datatypes* specify where acquired experimental data of currently supported types (`behav`, `ephys`, `funcimg` and `histology`) is stored. See the [*datatypes* section of the SWC-Blueprint for more details](https://swc-blueprint.neuroinformatics.dev/specification.html#datatype).
 
@@ -182,7 +182,7 @@ upload \
 
 Will *upload* (from *local* to *central* ) _behavioural_ _sessions_ 5 and 6, collected at any date, for _subjects_ 1 to 3.
 
-The keyword `all` can be input in place of a `-sub`, `-ses` or _datatype_ argument `-dt` to transfer all available subject, sessions or data types available. For example:
+The keyword `all` can be input in place of a `-sub`, `-ses` or _datatype_ argument `-dt` to transfer all available subject, sessions or datatypes available. For example:
 
 ```
 datashuttle \

tests/tests_integration/test_make_folders.py

@@ -246,7 +246,7 @@ def test_custom_folder_names(self, project):
     def test_datatypes_subsection(self, project, files_to_test):
         """
         Check that combinations of datatypes passed to make file folder
-        make the correct combination of data types.
+        make the correct combination of datatypes.
 
         Note this will fail when new top level folders are added, and should be
         updated.

tests/tests_integration/test_ssh_file_transfer.py

@@ -285,7 +285,7 @@ def make_pathtable_search_filter(self, sub_names, ses_names, datatype):
         create the table of only transferred sub, ses and datatype.
 
         Two arguments must be created, one of all sub / ses / datatypes
-        and the other of all non sub/ non ses / non data type
+        and the other of all non sub/ non ses / non datatype
         folders. These must be handled separately as they are
         mutually exclusive.
         """