test refactor qc-multiple-gene-associations to account for mondo-base…

… namespace
monarch-initiative · Nov 24, 2024 · b2381ff · b2381ff
1 parent 24e9c01
commit b2381ff
Showing 1 changed file with 12 additions and 3 deletions.
diff --git a/src/sparql/qc/mondo/qc-multiple-gene-associations.sparql b/src/sparql/qc/mondo/qc-multiple-gene-associations.sparql
@@ -2,9 +2,9 @@ PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 PREFIX obo: <http://purl.obolibrary.org/obo/>
-PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
-prefix mondoSparqlQcMondo: <http://purl.obolibrary.org/obo/mondo/sparql/qc/mondo/>
-prefix mondo: <http://purl.obolibrary.org/obo/mondo#>
+PREFIX mondoBase: <http://purl.obolibrary.org/obo/mondo/mondo-base#>
+PREFIX mondo: <http://purl.obolibrary.org/obo/mondo#>
+PREFIX mondoSparqlQcMondo: <http://purl.obolibrary.org/obo/mondo/sparql/qc/mondo/>
 
 # Get classes that have more than 1 gene association (either subClassOf or equivalentClass) with RO:0004003 property
 
@@ -18,9 +18,14 @@ WHERE {
     ?restriction rdf:type owl:Restriction ;
                  owl:onProperty obo:RO_0004003 ;
                  owl:someValuesFrom ?geneIdentifier .
+
+    # Exclusion filter for mondo and mondo-base namespaces to account for qc checks after roundtrip
     FILTER NOT EXISTS {
       ?entity mondo:excluded_from_qc_check mondoSparqlQcMondo:qc-multiple-gene-associations.sparql .
     }
+    FILTER NOT EXISTS {
+      ?entity mondoBase:excluded_from_qc_check mondoSparqlQcMondo:qc-multiple-gene-associations.sparql .
+    }
   }
   UNION
   {
@@ -34,9 +39,13 @@ WHERE {
                owl:onProperty obo:RO_0004003 ;
                owl:someValuesFrom ?geneIdentifier .
 
+    # Exclusion filter for mondo and mondo-base namespaces to account for qc checks after roundtrip
     FILTER NOT EXISTS {
       ?entity mondo:excluded_from_qc_check mondoSparqlQcMondo:qc-multiple-gene-associations.sparql .
     }
+    FILTER NOT EXISTS {
+      ?entity mondoBase:excluded_from_qc_check mondoSparqlQcMondo:qc-multiple-gene-associations.sparql .
+    }
   }
 }
 GROUP BY ?entity ?label