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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 236 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 52 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 2

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 18 6

Repositories

Showing 10 of 238 repositories
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 224 (1 issue needs help) 13 Updated Nov 28, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 24 1 Updated Nov 28, 2024
  • pheval.phen2gene Public

    A PhEval plugin for integrating Phen2Gene, enabling gene prioritisation based on phenotypic data in a standardised pipeline.

    monarch-initiative/pheval.phen2gene’s past year of commit activity
    Python 2 0 0 0 Updated Nov 28, 2024
  • monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    monarch-initiative/monarch-ingest’s past year of commit activity
    Python 15 2 32 2 Updated Nov 28, 2024
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 236 CC-BY-4.0 54 377 (2 issues need help) 35 Updated Nov 27, 2024
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 18 BSD-3-Clause 6 186 (3 issues need help) 10 Updated Nov 27, 2024
  • curategpt Public

    LLM-driven curation assist tool

    monarch-initiative/curategpt’s past year of commit activity
    Jupyter Notebook 71 BSD-3-Clause 12 27 4 Updated Nov 27, 2024
  • phenio Public

    An integrated ontology for Phenomics

    monarch-initiative/phenio’s past year of commit activity
    Makefile 6 BSD-3-Clause 0 17 0 Updated Nov 27, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 16 BSD-3-Clause 4 16 0 Updated Nov 27, 2024
  • pheval.kghg Public
    monarch-initiative/pheval.kghg’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 27, 2024
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