Merge pull request #598 from monarch-initiative/Issue597

Removed taxon-labels map requirement from hgnc gene ingest.
monarch-initiative · Aug 23, 2024 · a668fa6 · a668fa6
2 parents 712ac2d + cf1ff73
commit a668fa6
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Showing 2 changed files with 1 addition and 5 deletions.
diff --git a/src/monarch_ingest/ingests/hgnc/gene.py b/src/monarch_ingest/ingests/hgnc/gene.py
@@ -3,7 +3,6 @@
 from biolink_model.datamodel.pydanticmodel_v2 import Gene
 
 koza_app = get_koza_app("hgnc_gene")
-taxon_labels = koza_app.get_map("taxon-labels")
 
 while (row := koza_app.get_row()) is not None:
 
@@ -25,7 +24,7 @@
     )
 
     in_taxon = "NCBITaxon:9606"
-    in_taxon_label = taxon_labels[in_taxon]["label"]
+    in_taxon_label = "Homo sapiens"
 
     gene = Gene(
         id=row["hgnc_id"],

diff --git a/src/monarch_ingest/ingests/hgnc/gene.yaml b/src/monarch_ingest/ingests/hgnc/gene.yaml
@@ -65,9 +65,6 @@ columns:
   - mane_select
   - gencc
 
-depends_on:
-  - './src/monarch_ingest/maps/taxon-labels.yaml'
-
 node_properties:
   - 'id'
   - 'category'