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Val test 3

Val test 3 #57

Workflow file for this run

name: Validate Submission
on:
pull_request_target:
types: [synchronize, opened, reopened]
branches:
- main
paths:
- 'data-processed/**.parquet'
jobs:
validates-files:
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v3
with:
fetch-depth: 1
- name: Setup R
if: ( steps.change-check.outputs.skipnext != 'true' )
uses: r-lib/actions/setup-r@v2
- name: Install system dependencies
run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev
- name: Cache R packages
id: cache
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/requirements.txt') }}-1
- name: Install dependencies
if: ( steps.cache.outputs.cache-hit != 'true' )
run: |
R -e 'Sys.setenv("NOT_CRAN" = TRUE)
install.packages(c("arrow", "gh", "remotes"))
Sys.unsetenv("NOT_CRAN")
remotes::install_url("https://github.com/midas-network/SMHvalidation/archive/refs/heads/version.zip")
remotes::install_url("https://github.com/Infectious-Disease-Modeling-Hubs/hubUtils/archive/refs/heads/main.zip")'
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
- name: Run Validation - Open/reopen
if: ( github.event.action != 'synchronize' )
run: |
Rscript code/validation.R
env:
GH_PR_NUMBER: ${{ github.event.pull_request.number }}
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Run Validation - Synchronize
if: ( github.event.action == 'synchronize' )
run: |
Rscript code/validation.R
env:
GH_PR_NUMBER: ${{ github.event.pull_request.number }}
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
GH_COMMIT_SHA: ${{ github.event.pull_request.head.sha }}