Val test 3 #56
Workflow file for this run
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name: Validate Submission | |
on: | |
pull_request_target: | |
types: [synchronize, opened, reopened] | |
branches: | |
- main | |
paths: | |
- 'data-processed/**.parquet' | |
jobs: | |
validates-files: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 1 | |
- name: Setup R | |
if: ( steps.change-check.outputs.skipnext != 'true' ) | |
uses: r-lib/actions/setup-r@v2 | |
- name: Install system dependencies | |
run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev | |
- name: Cache R packages | |
id: cache | |
uses: actions/cache@v2 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/requirements.txt') }}-1 | |
- name: Install dependencies | |
if: ( steps.cache.outputs.cache-hit != 'true' ) | |
run: | | |
R -e 'Sys.setenv("NOT_CRAN" = TRUE) | |
install.packages(c("arrow", "gh", "remotes")) | |
Sys.unsetenv("NOT_CRAN") | |
remotes::install_url("https://github.com/midas-network/SMHvalidation/archive/refs/heads/version.zip") | |
remotes::install_url("https://github.com/Infectious-Disease-Modeling-Hubs/hubUtils/archive/refs/heads/main.zip")' | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
- name: Run Validation - Open/reopen | |
if: ( github.event.action != 'synchronize' ) | |
run: | | |
Rscript code/validation.R | |
env: | |
GH_PR_NUMBER: ${{ github.event.pull_request.number }} | |
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: Run Validation - Synchronize | |
if: ( github.event.action == 'synchronize' ) | |
run: | | |
Rscript code/validation.R | |
env: | |
GH_PR_NUMBER: ${{ github.event.pull_request.number }} | |
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
GH_COMMIT_SHA: ${{ github.event.pull_request.head.sha }} | |