Feature/add plots to result

[rugeli]

Problem

What is the problem this work solves, including
closes #254

Solution

• created a class to handle plot data(scatter plots and histograms) and added all plots to one list
• in the function histogram within Analysis.py, added the logic to insert plot data into result file. Set the argument add_to_result to true and set save_png to false, by default
• in simularium_helper, added plot data to the trajectory converter and had simularium io process the plot display on the website

with @meganrm @mogres @ascibisz and Joe

Type of change

• New feature (non-breaking change which adds functionality)

Steps to Verify:

1. Pack any recipes with the save_analyze_result config set to true to see if the plots display next to the result as expected

Screenshots (optional):

[github-actions]

Packing analysis report

Analysis for packing results located at cellpack/tests/outputs/test_spheres/spheresSST

Ingredient name	Encapsulating radius	Average number packed
ext_A	25	236.0

Packing image

Distance analysis

Expected minimum distance: 50.00
Actual minimum distance: 50.01

Ingredient key	Pairwise distance distribution
ext_A

[mogres]

Really cool feature! The PlotData class is super useful :) I was able to run the test_spheres recipe and generate simularium files with plots on the side!

Your PR description asks to set show_grid_plot config to true but I don't see it checked anywhere. Do you mean save_analyze_result?

[mogres]

Why do we have these additional conditions here? Wouldn't this prevent saving simularium files completely if there is more than one packing?

[meganrm]

it's because the saving happens from the Analysis class instead of the Env class

[rugeli]

Really cool feature! The PlotData class is super useful :) I was able to run the test_spheres recipe and generate simularium files with plots on the side!

Your PR description asks to set show_grid_plot config to true but I don't see it checked anywhere. Do you mean save_analyze_result?

ah right, I meant save_analyze_result, corrected!