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updated data and lint
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@hrishikeshpaul
hrishikeshpaul committed Aug 5, 2020
1 parent e0b7fb7 commit 10ecc4c
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Showing 11 changed files with 39 additions and 43 deletions.
10 changes: 5 additions & 5 deletions src/app/indent/indent.component.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ export class IndentComponent implements OnInit, OnChanges {
uberon: node.uberon,
level,
};
};
}

ngOnInit(): void {
this.indent.setCurrentSheet(this.currentSheet);
Expand Down Expand Up @@ -103,26 +103,26 @@ export class IndentComponent implements OnInit, OnChanges {

}


async getData() {
try {
const data = await this.sheet.getSheetData(this.currentSheet);
this.sheetData = data;
this.dataSource.data = [this.indent.makeIndentData(this.sheetData.data)];
this.indentTree.treeControl.expandAll();

this.returnRefresh.emit({
this.returnRefresh.emit({
comp: 'Indented List',
msg: this.sheetData.msg,
status: this.sheetData.status,
val: true,
});
this.report.reportLog(
this.report.reportLog(
`Indented List for ${this.currentSheet.display} successfully rendered.`,
'success',
'msg'
);

} catch (err) {
console.log(err);
this.returnRefresh.emit({
Expand Down
1 change: 0 additions & 1 deletion src/app/loading/loading.component.html
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,6 @@
>
<h1 style="margin: 0 auto;">Please wait while the data loads...</h1>
<embed style="margin: 0 auto;" src="assets/loading.svg" class="loadingSVG" />
<br />
<div style="margin: 0 auto;">
<h3>Fetching {{loadingText}} data</h3>
</div>
Expand Down
4 changes: 2 additions & 2 deletions src/app/services/bimodal.service.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ export interface ASCTD {
export class BimodalService {

constructor(public sheet: SheetService, public report: ReportService) { }

async makeASCTData(sheetData, treeData, bimodalConfig, currentSheet) {
let ASCTGraphData: ASCTD;
const links = [];
Expand All @@ -90,7 +90,7 @@ export class BimodalService {
const distance = currentSheet.config.bimodal_distance;
let id = 0;
let biomarkers = [];

// making anatomical structures (last layer of the tree)
treeData.forEach(td => {
if (td.children === 0) {
Expand Down
2 changes: 1 addition & 1 deletion src/app/services/sheet.service.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ export class SheetService {
public async getDataFromURL(url: string, header_count = 11): Promise<any> {
return new Promise(async (res, rej) => {
try {
let data = await this.http
const data = await this.http
.get(url, { responseType: 'text' })
.toPromise();
const parsedData = parse(data);
Expand Down
4 changes: 1 addition & 3 deletions src/app/tree/tree.component.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -65,9 +65,7 @@ export class TreeComponent implements OnInit, OnChanges, OnDestroy {
}
};

constructor(public sheet: SheetService, public report: ReportService, public ts: TreeService, public bms: BimodalService) {

}
constructor(public sheet: SheetService, public report: ReportService, public ts: TreeService, public bms: BimodalService) { }

ngOnInit(): void {

Expand Down
1 change: 0 additions & 1 deletion src/app/vis/vis.component.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,6 @@ export class VisComponent implements OnInit {
this.openLoading();
this.displayGraph = val;
this.shouldRefreshData = true;

}

refreshData(val) {
Expand Down
36 changes: 18 additions & 18 deletions src/assets/data/li.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -36,18 +36,18 @@ large bowel,ileo-cecal valve,mucosa,Lamina propria/Gut associated lymphoid tissu
large bowel,ileo-cecal valve,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),Innate lymphoid cell,"CD127, CD117, CD161",
large bowel,ileo-cecal valve,mucosa,muscularis mucosa,muscle,aSMA,
large bowel,ileo-cecal valve,submucosa,submucosa,nerve,"PDL1, CD56, PGP9.5",
large bowel,ileo-cecal valve,submucosa,submucosa,endothelial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ileo-cecal valve,submucosa,submucosa,endothelial cell ,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ileo-cecal valve,submucosa,submucosa,lymphatic,"CD31, Podoplanin",
large bowel,ileo-cecal valve,submucosa,submucosal plexus of Meissner,nerve,"PDL1, CD56, PGP9.5",
large bowel,ileo-cecal valve,submucosa,submucosal plexus of Meissner,muscle,aSMA,
large bowel,ileo-cecal valve,muscularis externa,circular/longitudinal muscle,muscle,aSMA,
large bowel,ileo-cecal valve,muscularis externa,circular/longitudinal muscle,Interstitial cell of Cajal,"CD117, CD34",
large bowel,ileo-cecal valve,muscularis externa,circular/longitudinal muscle,fibroblast,"Col6A1, Col6A2","COL6A1, COL6A2"
large bowel,ileo-cecal valve,muscularis externa,circular/longitudinal muscle,endothelial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ileo-cecal valve,muscularis externa,circular/longitudinal muscle,endothelial cell,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ileo-cecal valve,muscularis externa,circular/longitudinal muscle,nerve,"PDL1, CD56, PGP9.5",
large bowel,ileo-cecal valve,muscularis externa,myenteric plexus of Auerbach,nerve,"PDL1, CD56, PGP9.5",
large bowel,ileo-cecal valve,muscularis externa,myenteric plexus of Auerbach,muscle,aSMA,
large bowel,ileo-cecal valve,serosa,,mesothelial,Cytokeratin,
large bowel,ileo-cecal valve,serosa,,mesothelial cell,Cytokeratin,
large bowel,ileo-cecal valve,serosa,connective tissue,fibroblast,,"COL6A1, COL6A2"
large bowel,ileo-cecal valve,serosa,connective tissue,endothelial cell,,"NOVA2, SOX17"
large bowel,ceacum,mucosa,Epithelium,epithelial stem cell,"CD34, SOX9, CD44","LGR5, ASCL2, CDHR1, BIRC3, MYL9"
Expand All @@ -57,7 +57,7 @@ large bowel,ceacum,mucosa,Epithelium,absorptive,,"CA2, SI"
large bowel,ceacum,mucosa,Epithelium,goblet,,"MUC2, ITLN1, SLC26A2, CLCA4"
large bowel,ceacum,mucosa,Epithelium,enterocyte,,"BEST4, CA7, NEURL1, HES1"
large bowel,ceacum,mucosa,Epithelium,Tuft cell,,"DCLK1, IRF7, SELENBP1"
large bowel,ceacum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),endothelial,"CD31, CD34, CD36","CD36, SOX17"
large bowel,ceacum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),endothelial cell,"CD31, CD34, CD36","CD36, SOX17"
large bowel,ceacum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),lymphatics,"CD31, Podoplanin",
large bowel,ceacum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),myofibroblast,,"TP53I3, DES, ACTG2, CNN1"
large bowel,ceacum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),fibroblast,"Col6A1, Col6A2","COL6A1, COL6A2"
Expand All @@ -77,18 +77,18 @@ large bowel,ceacum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),D
large bowel,ceacum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),Innate lymphoid cell,"CD127, CD117, CD161",
large bowel,ceacum,mucosa,muscularis mucosa,muscle,aSMA,
large bowel,ceacum,submucosa,submucosa,nerve,"PDL1, CD56, PGP9.5",
large bowel,ceacum,submucosa,submucosa,endoethlial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ceacum,submucosa,submucosa,endoethlial cell,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ceacum,submucosa,submucosa,lymphatic,"CD31, Podoplanin",
large bowel,ceacum,submucosa,submucosal plexus of Meissner,nerve,"PDL1, CD56, PGP9.5",
large bowel,ceacum,submucosa,submucosal plexus of Meissner,muscle,aSMA,
large bowel,ceacum,muscularis externa,circular/longitudinal muscle,muscle,aSMA,
large bowel,ceacum,muscularis externa,circular/longitudinal muscle,Interstitial cell of Cajal,"CD117, CD34",
large bowel,ceacum,muscularis externa,circular/longitudinal muscle,fibroblast,"Col6A1, Col6A2","COL6A1, COL6A2"
large bowel,ceacum,muscularis externa,circular/longitudinal muscle,endothelial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ceacum,muscularis externa,circular/longitudinal muscle,endothelial cell,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,ceacum,muscularis externa,circular/longitudinal muscle,nerve,"PDL1, CD56, PGP9.5",
large bowel,ceacum,muscularis externa,myenteric plexus of Auerbach,nerve,"PDL1, CD56, PGP9.5",
large bowel,ceacum,muscularis externa,myenteric plexus of Auerbach,muscle,aSMA,
large bowel,ceacum,serosa,,mesothelial,Cytokeratin,
large bowel,ceacum,serosa,,mesothelial cell,Cytokeratin,
large bowel,ceacum,serosa,connective tissue,fibroblast,,"COL6A1, COL6A2"
large bowel,ceacum,serosa,connective tissue,endothelial cell,,"NOVA2, SOX17"
large bowel,Appendix,mucosa,Epithelium,epithelial stem cell,"CD34, SOX9, CD44","LGR5, ASCL2, CDHR1, BIRC3, MYL9"
Expand All @@ -98,7 +98,7 @@ large bowel,Appendix,mucosa,Epithelium,absorptive,,"CA2, SI"
large bowel,Appendix,mucosa,Epithelium,goblet,,"MUC2, ITLN1, SLC26A2, CLCA4"
large bowel,Appendix,mucosa,Epithelium,enterocyte,,"BEST4, CA7, NEURL1, HES1"
large bowel,Appendix,mucosa,Epithelium,Tuft cell,,"DCLK1, IRF7, SELENBP1"
large bowel,Appendix,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),endothelial,"CD31, CD34, CD36","CD36, SOX17"
large bowel,Appendix,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),endothelial cell,"CD31, CD34, CD36","CD36, SOX17"
large bowel,Appendix,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),lymphatics,"CD31, Podoplanin",
large bowel,Appendix,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),myofibroblast,,"TP53I3, DES, ACTG2, CNN1"
large bowel,Appendix,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),fibroblast,"Col6A1, Col6A2","COL6A1, COL6A2"
Expand All @@ -118,18 +118,18 @@ large bowel,Appendix,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT)
large bowel,Appendix,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),Innate lymphoid cell,"CD127, CD117, CD161",
large bowel,Appendix,mucosa,muscularis mucosa,muscle,aSMA,
large bowel,Appendix,submucosa,submucosa,nerve,"PDL1, CD56, PGP9.5",
large bowel,Appendix,submucosa,submucosa,endoethlial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,Appendix,submucosa,submucosa,endoethlial cell,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,Appendix,submucosa,submucosa,lymphatic,"CD31, Podoplanin",
large bowel,Appendix,submucosa,submucosal plexus of Meissner,nerve,"PDL1, CD56, PGP9.5",
large bowel,Appendix,submucosa,submucosal plexus of Meissner,muscle,aSMA,
large bowel,Appendix,muscularis externa,circular/longitudinal muscle,muscle,aSMA,
large bowel,Appendix,muscularis externa,circular/longitudinal muscle,Interstitial cell of Cajal,"CD117, CD34",
large bowel,Appendix,muscularis externa,circular/longitudinal muscle,fibroblast,"Col6A1, Col6A2","COL6A1, COL6A2"
large bowel,Appendix,muscularis externa,circular/longitudinal muscle,endothelial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,Appendix,muscularis externa,circular/longitudinal muscle,endothelial cell,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,Appendix,muscularis externa,circular/longitudinal muscle,nerve,"PDL1, CD56, PGP9.5",
large bowel,Appendix,muscularis externa,myenteric plexus of Auerbach,nerve,"PDL1, CD56, PGP9.5",
large bowel,Appendix,muscularis externa,myenteric plexus of Auerbach,muscle,aSMA,
large bowel,Appendix,serosa,,mesothelial,Cytokeratin,
large bowel,Appendix,serosa,,mesothelial cell,Cytokeratin,
large bowel,Appendix,serosa,connective tissue,fibroblast,,"COL6A1, COL6A2"
large bowel,Appendix,serosa,connective tissue,endothelial cell,,"NOVA2, SOX17"
large bowel,colon ascending/right,mucosa,Epithelium,epithelial stem cell,"CD34, SOX9, CD44","LGR5, ASCL2, CDHR1, BIRC3, MYL9"
Expand All @@ -139,7 +139,7 @@ large bowel,colon ascending/right,mucosa,Epithelium,absorptive,,"CA2, SI"
large bowel,colon ascending/right,mucosa,Epithelium,goblet,,"MUC2, ITLN1, SLC26A2, CLCA4"
large bowel,colon ascending/right,mucosa,Epithelium,enterocyte,,"BEST4, CA7, NEURL1, HES1"
large bowel,colon ascending/right,mucosa,Epithelium,Tuft cell,,"DCLK1, IRF7, SELENBP1"
large bowel,colon ascending/right,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),endothelial,"CD31, CD34, CD36","CD36, SOX17"
large bowel,colon ascending/right,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),endothelial cell,"CD31, CD34, CD36","CD36, SOX17"
large bowel,colon ascending/right,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),lymphatics,"CD31, Podoplanin",
large bowel,colon ascending/right,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),myofibroblast,,"TP53I3, DES, ACTG2, CNN1"
large bowel,colon ascending/right,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),fibroblast,"Col6A1, Col6A2","COL6A1, COL6A2"
Expand All @@ -159,18 +159,18 @@ large bowel,colon ascending/right,mucosa,Lamina propria/Gut associated lymphoid
large bowel,colon ascending/right,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),Innate lymphoid cell,"CD127, CD117, CD161",
large bowel,colon ascending/right,mucosa,muscularis mucosa,muscle,aSMA,
large bowel,colon ascending/right,submucosa,submucosa,nerve,"PDL1, CD56, PGP9.5",
large bowel,colon ascending/right,submucosa,submucosa,endoethlial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,colon ascending/right,submucosa,submucosa,endoethlial cell,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,colon ascending/right,submucosa,submucosa,lymphatic,"CD31, Podoplanin",
large bowel,colon ascending/right,submucosa,submucosal plexus of Meissner,nerve,"PDL1, CD56, PGP9.5",
large bowel,colon ascending/right,submucosa,submucosal plexus of Meissner,muscle,aSMA,
large bowel,colon ascending/right,muscularis externa,circular/longitudinal muscle,muscle,aSMA,
large bowel,colon ascending/right,muscularis externa,circular/longitudinal muscle,Interstitial cell of Cajal,"CD117, CD34",
large bowel,colon ascending/right,muscularis externa,circular/longitudinal muscle,fibroblast,"Col6A1, Col6A2","COL6A1, COL6A2"
large bowel,colon ascending/right,muscularis externa,circular/longitudinal muscle,endothelial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,colon ascending/right,muscularis externa,circular/longitudinal muscle,endothelial cell,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,colon ascending/right,muscularis externa,circular/longitudinal muscle,nerve,"PDL1, CD56, PGP9.5",
large bowel,colon ascending/right,muscularis externa,myenteric plexus of Auerbach,nerve,"PDL1, CD56, PGP9.5",
large bowel,colon ascending/right,muscularis externa,myenteric plexus of Auerbach,muscle,aSMA,
large bowel,colon ascending/right,serosa,,mesothelial,Cytokeratin,
large bowel,colon ascending/right,serosa,,mesothelial cell,Cytokeratin,
large bowel,colon ascending/right,serosa,connective tissue,fibroblast,,"COL6A1, COL6A2"
large bowel,colon ascending/right,serosa,connective tissue,endothelial cell,,"NOVA2, SOX17"
large bowel,"colon, transverse",mucosa,Epithelium,epithelial stem cell,"CD34, SOX9, CD44","LGR5, ASCL2, CDHR1, BIRC3, MYL9"
Expand Down Expand Up @@ -323,7 +323,7 @@ large bowel,rectum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),D
large bowel,rectum,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),Innate lymphoid cell,"CD127, CD117, CD161",
large bowel,rectum,mucosa,muscularis mucosa,muscle,aSMA,
large bowel,rectum,submucosa,submucosa,nerve,"PDL1, CD56, PGP9.5",
large bowel,rectum,submucosa,submucosa,endoethlial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,rectum,submucosa,submucosa,endothelial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,rectum,submucosa,submucosa,lymphatic,"CD31, Podoplanin",
large bowel,rectum,submucosa,submucosal plexus of Meissner,nerve,"PDL1, CD56, PGP9.5",
large bowel,rectum,submucosa,submucosal plexus of Meissner,muscle,aSMA,
Expand All @@ -334,7 +334,7 @@ large bowel,rectum,muscularis externa,circular/longitudinal muscle,endothelial,"
large bowel,rectum,muscularis externa,circular/longitudinal muscle,nerve,"PDL1, CD56, PGP9.5",
large bowel,rectum,muscularis externa,myenteric plexus of Auerbach,nerve,"PDL1, CD56, PGP9.5",
large bowel,rectum,muscularis externa,myenteric plexus of Auerbach,muscle,aSMA,
large bowel,rectum,serosa,,mesothelial,Cytokeratin,
large bowel,rectum,serosa,,mesothelial cell,Cytokeratin,
large bowel,rectum,serosa,connective tissue,fibroblast,,"COL6A1, COL6A2"
large bowel,rectum,serosa,connective tissue,endothelial cell,,"NOVA2, SOX17"
large bowel,anal canal,mucosa,Epithelium,epithelial stem cell,"CD34, SOX9, CD44","LGR5, ASCL2, CDHR1, BIRC3, MYL9"
Expand Down Expand Up @@ -364,7 +364,7 @@ large bowel,anal canal,mucosa,Lamina propria/Gut associated lymphoid tissue (GAL
large bowel,anal canal,mucosa,Lamina propria/Gut associated lymphoid tissue (GALT),Innate lymphoid cell,"CD127, CD117, CD161",
large bowel,anal canal,mucosa,muscularis mucosa,muscle,aSMA,
large bowel,anal canal,submucosa,submucosa,nerve,"PDL1, CD56, PGP9.5",
large bowel,anal canal,submucosa,submucosa,endoethlial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,anal canal,submucosa,submucosa,endothelial,"CD31, CD34, CD36","NOVA2, SOX17"
large bowel,anal canal,submucosa,submucosa,lymphatic,"CD31, Podoplanin",
large bowel,anal canal,submucosa,submucosal plexus of Meissner,nerve,"PDL1, CD56, PGP9.5",
large bowel,anal canal,submucosa,submucosal plexus of Meissner,muscle,aSMA,
Expand Down
2 changes: 1 addition & 1 deletion src/assets/data/liver.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ hepatic Lobule,Liver immune resident component,,conventional Dendritic cell,,"CD
hepatic Lobule,Liver immune resident component,,Conventional DC 1,,CD141+ (BDCA-3)
hepatic Lobule,Liver immune resident component,,Conventional DC 2,,CD1c (BDCA-1)
hepatic Lobule,Liver immune resident component,,plasmacytoid Dendritic cell,,CD11c Neg
hepatic Lobule,Liver immune resident component,,CD8 TRm (residence memory),HOBIT and BLIMP1,"CD8, TCRαβ, CD69 and CD103"
hepatic Lobule,Liver immune resident component,,CD8 TRm (residence memory),"HOBIT, BLIMP1","CD8, TCRαβ, CD69 and CD103"
hepatic Lobule,Liver immune resident component,,CD4+T cell,,"CD4, TCRαβ"
hepatic Lobule,Liver immune resident component,,gamma delta T cell,,"γδTCR,CD27lo, CD45RAlo subset of Vδ1+ T, CD69, CXCR3, and CXCR6"
hepatic Lobule,Liver immune resident component,,CD8+ Liver-Resident Memory T cell,,"CXCR3 and CXCR6, CCR7, CD62L, KLF2, and S1PR1"
Expand Down
6 changes: 3 additions & 3 deletions src/assets/data/lymph.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -23,19 +23,19 @@ Lobule,Trabecular Sinus,,,Neutrophil,MPO+
Lobule,Venule,Blood Vessels,,Blood Endothelial Cell,"CD31+, CD34+, CD105+"
Lobule,Arteriole,Blood Vessels,,Blood Endothelial Cell,"CD31+, CD34+, CD105+"
Lobule,Primary Follicle,,,Follicular Dendritic Cell,"CD21+, CD35+"
Lobule,Primary Follicle,,,Naive B Cell,"CD45RA+, CD21+, CD20+, IgM+, IgD+, CD23+,HLA DR+"
Lobule,Primary Follicle,,,Naive B Cell,"CD45RA+, CD21+, CD20+, IgM+, IgD+, CD23+,HLA-DR+"
Lobule,Primary Follicle,,,Mature B Cell,"CD19+, CD20+, CD79a+,CD45RO+"
Lobule,Primary Follicle,,,Macrophage,"CD11b+, CD169+"
Lobule,Primary Follicle,,,Fibroblastic Reticular Cell,"Podoplanin+, Desmin+, Collagen I+, Smooth Muscle Actin+"
Lobule,Secondary Follicle,Germinal Center,Light Zone,Follicular Dendritic Cell,"HLA DR+, Podoplanin+, CD21+, CD23+, CD35+"
Lobule,Secondary Follicle,Germinal Center,Light Zone,Follicular Dendritic Cell,"HLA-DR+, Podoplanin+, CD21+, CD23+, CD35+"
Lobule,Secondary Follicle,Germinal Center,Light Zone,Centrocytes,"CD21+, CD10+, Ki67+, CXCR5+"
Lobule,Secondary Follicle,Germinal Center,Light Zone,T Follicular Helper cell,"CD4+, CXCR5+, CD69+, CD10+, PD-1+"
Lobule,Secondary Follicle,Germinal Center,Light Zone,T follicular regulatory helper ,"CD4+, FOXP3+, PD-1+"
Lobule,Secondary Follicle,Germinal Center,Light Zone,Tingible Body Macrophage,"CD68+, CD169+"
Lobule,Secondary Follicle,Germinal Center,Light Zone,Plasmablast,"CD138+, CD79a+"
Lobule,Secondary Follicle,Germinal Center,Dark Zone,Centroblast,"CXCR4+, HLA-DR+, CD10+, CD19+"
Lobule,Secondary Follicle,Germinal Center,Dark Zone,Reticular cell,"CXCL12+, Collagen IV+, Laminin+"
Lobule,Secondary Follicle,Germinal Center,Mantle Zone,Naive B cell,"HLA DR+, IgM+, IgD+, CD20+, CD19+, CD45RA+, CD79a+, CD21+"
Lobule,Secondary Follicle,Germinal Center,Mantle Zone,Naive B cell,"HLA-DR+, IgM+, IgD+, CD20+, CD19+, CD45RA+, CD79a+, CD21+"
Lobule,Secondary Follicle,Germinal Center,Mantle Zone,Macrophage,"CD169+, CD11b+"
Lobule,Secondary Follicle,Germinal Center,Mantle Zone,Memory B cell,"CD45+, CD20+, CD19+"
Lobule,Secondary Follicle,Germinal Center,Mantle Zone,T Helper cell,"CD3+, CD4+"
Expand Down
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