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Update README.md
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Strausyatina authored Jan 31, 2023
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Expand Up @@ -7,10 +7,11 @@ This R-package performs **sample overdispersion estimation** from RNA spike-ins
```
devtools::install_github("gimelbrantlab/controlFreq")
```
Dependencies: [Qllelic](https://github.com/gimelbrantlab/Qllelic)

## Usage:
Please see Wiki page connected to this repository.
## Example usage:
```
compute_iQCC_for_selected_samples(df = allelic-counts-table, reps = 1:10, sup_Q = 30)
```

* For allelic bias test and differential AI test, see [Qllelic R-package](https://github.com/gimelbrantlab/Qllelic) functions and *["Replicate sequencing libraries are important for quantification of allelic imbalance", A.Mendelevich et.al](https://www.nature.com/articles/s41467-021-23544-8)*.

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