Add pod5 datatype #4403
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Test Galaxy packages for Pulsar | |
on: | |
push: | |
paths-ignore: | |
- 'client/**' | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
pull_request: | |
paths-ignore: | |
- 'client/**' | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
name: Test | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ['3.7'] # don't upgrade, see https://github.com/galaxyproject/galaxy/pull/16649 | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
path: 'galaxy root' | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Cache pip dir | |
uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pip | |
key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }} | |
- name: Install Apptainer's singularity | |
uses: eWaterCycle/setup-apptainer@v2 | |
- name: Install ffmpeg | |
run: sudo apt-get update && sudo apt-get -y install ffmpeg | |
- name: Install tox | |
run: pip install tox | |
- name: Run tests | |
run: tox -e test_galaxy_packages_for_pulsar | |
working-directory: 'galaxy root' |