v1.0.2: Nature publication release

Baker, et al. Dairy cows inoculated with highly pathogenic avian influenza virus H5N1. Nature (2024) DOI and link to early release article

-ML trees folder includes genbank accessions from Nguyen et al. preprint that generated the sequence data
-New release includes DOI for the AgDataCommons raw sequence reads from the study

v1.0.1: Nature publication release

Baker, et al. Dairy cows inoculated with highly pathogenic avian influenza virus H5N1. Nature (2024) DOI and link to early release article

-New release includes DOI for the AgDataCommons raw sequence reads from the study

Nature publication release

Baker, et al. Dairy cows inoculated with highly pathogenic avian influenza virus H5N1. Nature (2024) DOI and link to early release article

v0.1.2: include WGS analysis

• Update includes input and description of WGS analysis to determine whether the challenge strain was representative.

v0.1.1: minor updates to readme and files

• minor updates to readme and files, zenodo integration

0.1.0: data and code from bioRxiv

• release of data and code associated with preprint on bioRxiv. Baker et al.