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@@ -14,7 +14,7 @@ Baker AL, Arruda B, Palmer MV, Boggiatto P, Davila KS, Buckley A, Zanella GC, Sn
### Project structure ###
See the respective README.txt files within the folders for details/instructions.
-[ML_Trees](ML_Trees/): Input and output from the genetic sequence analysis: includes PDF tree figures.
-[ML_Trees](ML_Trees/): Input and output from the genetic sequence analysis: includes PDF tree figures and NCBI Genbank accessions of data from prior study that was used again in this work.
-[SNV_results](SNV_results/): Variant calling analysis. All tables and data generated from within-host variant calling analysis.
-[clinical-challenge-study-data.xlsx](): all supplemental tables and data associated with manuscript.
-[WGS-representativity](WGS-representativity/): Analysis to identify how representative the challenge strain was relative to field collected samples.
