Work on the next release #64
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mrvollger
commented
Nov 8, 2024
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mrvollger
commented
- fix: do not report m6A predictions that happen within the first 7 or last 7 bp of a read. This is so the ML model only operates on real data. No changes to other calls. Will fix False methylations called in first 7 or so bp #65
- fix: report footprint codes even if there is no spanning msp, fixes ft footprint related #63
- feat: add a pyft utility that can take extract --all data and make it long format for plotting.
- feat: Add a shuffle option to pileup to help with the FDR calculations in FIRE
- feat: make nucleosomes and MSPs optional in pileup
- chore: use vergen for cli version
- feat: add phasing stats to QC
- feat: allow strip-base mods to filter on base mod quality.
…addition to the real one
…last 7 bp of a read. This is so the ML model only operates on real data. No changes to other calls.
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