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@fiberseq

fiberseq

README.md

fiberseq

This is an organization for tools used in processing Fiber-seq data. Please see the book for documentation on processing Fiber-seq data.

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  1. fibertools-rs fibertools-rs Public

    Tools for fiberseq data written in rust.

    Rust 43 5

  2. FIRE FIRE Public

    A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.

    Python 16 3

  3. fiberseq-qc fiberseq-qc Public

    QC plots and statistics

    Shell 2

  4. fiberseq.github.io fiberseq.github.io Public

    Source for "The computational guide to Fiber-seq"

    Python

Repositories

Showing 8 of 8 repositories
  • FIRE Public

    A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.

    fiberseq/FIRE’s past year of commit activity
    Python 16 MIT 3 1 0 Updated Dec 23, 2024
  • fibertools-rs Public

    Tools for fiberseq data written in rust.

    fiberseq/fibertools-rs’s past year of commit activity
    Rust 43 5 2 0 Updated Dec 11, 2024
  • fiberseq.github.io Public

    Source for "The computational guide to Fiber-seq"

    fiberseq/fiberseq.github.io’s past year of commit activity
    Python 0 0 0 0 Updated Dec 11, 2024
  • FiberHMM Public

    HMM-based footprint caller for Fiber-seq data

    fiberseq/FiberHMM’s past year of commit activity
    Python 1 0 0 0 Updated Nov 14, 2024
  • fiberseq-qc Public

    QC plots and statistics

    fiberseq/fiberseq-qc’s past year of commit activity
    Shell 2 GPL-3.0 0 0 0 Updated Sep 22, 2024
  • .github Public
    fiberseq/.github’s past year of commit activity
    0 0 0 0 Updated Jul 25, 2024
  • train-m6A-calling Public

    ML methods for m6A-calling

    fiberseq/train-m6A-calling’s past year of commit activity
    Jupyter Notebook 3 MIT 1 0 1 Updated Apr 18, 2024
  • fiberseq-smk Public archive

    Snakemake pipeline for processing fiberseq data

    fiberseq/fiberseq-smk’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Jan 11, 2024

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