fix: fix label on FIRE vs LINKER for decorator tracks

fiberseq · Jul 15, 2024 · c92a4d4 · c92a4d4
1 parent 7546c09
commit c92a4d4
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Showing 2 changed files with 10 additions and 3 deletions.
diff --git a/src/decorator.rs b/src/decorator.rs
@@ -183,12 +183,19 @@ pub fn fire_decorators(fiber: &FiberseqData) -> Vec<Decorator> {
     let mut rtn = vec![];
     for (color, values) in map.into_iter() {
         let (starts, lengths): (Vec<Option<i64>>, Vec<Option<i64>>) = values.into_iter().unzip();
+        let el_type = if *color == LINKER_COLOR {
+            "LINKER"
+        } else if *color == NUC_COLOR {
+            "NUC"
+        } else {
+            "FIRE"
+        };
         rtn.push(Decorator::new(
             fiber,
             &starts,
             Some(&lengths),
             color,
-            "FIRE",
+            el_type,
         ));
     }
     rtn

diff --git a/tests/test-decorator.sh b/tests/test-decorator.sh
@@ -18,12 +18,12 @@ echo ""
 rg FIRE -z tmp.dec.bed12.gz | cut -f 9,10 | sort | datamash -g 1 sum 2
 echo ""
 
-as="../fiberseq-fire/workflow/templates/bed12_filter.as"
+as="../FIRE/workflow/templates/bed12_filter.as"
 bedToBigBed -allow1bpOverlap -type=bed12+ -as=$as tmp.bed12.gz tests/data/hg38.analysisSet.fa.fai tmp.bed12.bb
 
 echo "done bed12"
 
-as="../fiberseq-fire/workflow/templates/decoration.as"
+as="../FIRE/workflow/templates/decoration.as"
 bedToBigBed -allow1bpOverlap -type=bed12+ -as=$as tmp.dec.bed12.gz tests/data/hg38.analysisSet.fa.fai tmp.dec.bed12.bb
 
 aws s3 sync --profile Mitchell_Vollger --exclude "*" --include "tmp.*bb" $@ . s3://stergachis-public1/Mitchell/temp/FIREv2/