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Merge branch 'european-modelling-hubs:main' into main
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@reneniehus
reneniehus authored Dec 20, 2023
2 parents a49dd94 + afd9871 commit 4de5eed
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2 changes: 1 addition & 1 deletion code/ensemble/EuroCOVIDhub/create-weekly-ensemble.R
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Expand Up @@ -27,7 +27,7 @@ hub_ensemble <- run_ensemble(
method = method,
forecast_date = forecast_date,
exclude_models = exclude_models,
min_nmodels = 4,
min_nmodels = 3,
return_criteria = TRUE
)

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32 changes: 32 additions & 0 deletions code/validation/check_truth.txt
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Expand Up @@ -6118,3 +6118,35 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-

- The following locations are missing: ['Italy'].

Latest check of truth data: 2023-12-20

WARNING
Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-12-09:

- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'France', 'Germany', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].

WARNING
Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-12-09:

- The following locations are missing: ['Austria', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'France', 'Germany', 'Hungary', 'Iceland', 'Italy', 'Latvia', 'Liechtenstein', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovenia', 'Spain'].

WARNING
Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Deaths.csv' at 2023-12-09:

- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'France', 'Germany', 'Hungary', 'Iceland', 'Latvia', 'Luxembourg', 'Netherlands', 'Norway', 'Spain'].

WARNING
Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truth_ECDC-Incident Cases.csv' at 2023-12-09:

- The following locations are missing: ['Austria', 'Croatia', 'Cyprus', 'Finland', 'France', 'Germany', 'Latvia', 'Spain'].

WARNING
Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-12-16:

- The following locations are missing: ['Czechia', 'Italy'].

WARNING
Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-12-16:

- The following locations are missing: ['Italy'].

480 changes: 480 additions & 0 deletions data-processed/EuroCOVIDhub-ensemble/2023-12-18-EuroCOVIDhub-ensemble.csv
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6 changes: 0 additions & 6 deletions data-truth/ECDC/truncated_ECDC-Incident Cases.csv
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Expand Up @@ -3658,9 +3658,6 @@ Liechtenstein,LI,2023-10-28,8,ECDC,2023-12-15,final
Liechtenstein,LI,2023-11-04,7,ECDC,2023-12-15,final
Liechtenstein,LI,2023-11-11,5,ECDC,2023-12-15,final
Liechtenstein,LI,2023-11-18,8,ECDC,2023-12-15,near final
Liechtenstein,LI,2023-11-25,10,ECDC,2023-12-15,near final
Liechtenstein,LI,2023-12-02,8,ECDC,2023-12-15,near final
Liechtenstein,LI,2023-12-09,17,ECDC,2023-12-15,near final
Lithuania,LT,2020-01-04,0,ECDC,2022-08-12,final
Lithuania,LT,2020-01-11,0,ECDC,2022-08-12,final
Lithuania,LT,2020-01-18,0,ECDC,2022-08-12,final
Expand Down Expand Up @@ -4072,7 +4069,6 @@ Luxembourg,LU,2023-11-11,294,ECDC,2023-12-15,final
Luxembourg,LU,2023-11-18,259,ECDC,2023-12-15,near final
Luxembourg,LU,2023-11-25,319,ECDC,2023-12-15,near final
Luxembourg,LU,2023-12-02,460,ECDC,2023-12-15,near final
Luxembourg,LU,2023-12-09,658,ECDC,2023-12-15,near final
Malta,MT,2020-01-04,0,ECDC,2022-08-12,final
Malta,MT,2020-01-11,0,ECDC,2022-08-12,final
Malta,MT,2020-01-18,0,ECDC,2022-08-12,final
Expand Down Expand Up @@ -4481,8 +4477,6 @@ Netherlands,NL,2023-10-28,837,ECDC,2023-12-15,final
Netherlands,NL,2023-11-04,920,ECDC,2023-12-15,final
Netherlands,NL,2023-11-11,903,ECDC,2023-12-15,final
Netherlands,NL,2023-11-18,868,ECDC,2023-12-15,near final
Netherlands,NL,2023-11-25,917,ECDC,2023-12-15,near final
Netherlands,NL,2023-12-02,1052,ECDC,2023-12-15,near final
Norway,NO,2020-01-04,0,ECDC,2022-08-12,final
Norway,NO,2020-01-11,0,ECDC,2022-08-12,final
Norway,NO,2020-01-18,0,ECDC,2022-08-12,final
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4 changes: 0 additions & 4 deletions data-truth/ECDC/truncated_ECDC-Incident Deaths.csv
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Expand Up @@ -1822,8 +1822,6 @@ Finland,FI,2023-10-28,116,ECDC,2023-12-15,final
Finland,FI,2023-11-04,164,ECDC,2023-12-15,final
Finland,FI,2023-11-11,204,ECDC,2023-12-15,final
Finland,FI,2023-11-18,108,ECDC,2023-12-15,near final
Finland,FI,2023-11-25,6,ECDC,2023-12-15,near final
Finland,FI,2023-12-02,6,ECDC,2023-12-15,near final
France,FR,2020-01-04,0,ECDC,2022-08-12,final
France,FR,2020-01-11,0,ECDC,2022-08-12,final
France,FR,2020-01-18,0,ECDC,2022-08-12,final
Expand Down Expand Up @@ -5464,8 +5462,6 @@ Slovakia,SK,2023-10-14,1,ECDC,2023-11-17,final
Slovakia,SK,2023-10-28,5,ECDC,2023-12-15,final
Slovakia,SK,2023-11-04,4,ECDC,2023-12-15,final
Slovakia,SK,2023-11-11,3,ECDC,2023-12-15,final
Slovakia,SK,2023-11-18,4,ECDC,2023-12-15,near final
Slovakia,SK,2023-11-25,2,ECDC,2023-12-15,near final
Slovenia,SI,2020-01-04,0,ECDC,2022-08-12,final
Slovenia,SI,2020-01-11,0,ECDC,2022-08-12,final
Slovenia,SI,2020-01-18,0,ECDC,2022-08-12,final
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12 changes: 6 additions & 6 deletions data-truth/ECDC/truth_ECDC-Incident Cases.csv
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Expand Up @@ -3669,9 +3669,9 @@ Liechtenstein,LI,2023-10-28,8,ECDC,2023-12-15,final
Liechtenstein,LI,2023-11-04,7,ECDC,2023-12-15,final
Liechtenstein,LI,2023-11-11,5,ECDC,2023-12-15,final
Liechtenstein,LI,2023-11-18,8,ECDC,2023-12-15,near final
Liechtenstein,LI,2023-11-25,10,ECDC,2023-12-15,near final
Liechtenstein,LI,2023-12-02,8,ECDC,2023-12-15,near final
Liechtenstein,LI,2023-12-09,17,ECDC,2023-12-15,near final
Liechtenstein,LI,2023-11-25,10,ECDC,2023-12-15,expecting revisions
Liechtenstein,LI,2023-12-02,8,ECDC,2023-12-15,expecting revisions
Liechtenstein,LI,2023-12-09,17,ECDC,2023-12-15,expecting revisions
Lithuania,LT,2020-01-04,0,ECDC,2022-08-12,final
Lithuania,LT,2020-01-11,0,ECDC,2022-08-12,final
Lithuania,LT,2020-01-18,0,ECDC,2022-08-12,final
Expand Down Expand Up @@ -4083,7 +4083,7 @@ Luxembourg,LU,2023-11-11,294,ECDC,2023-12-15,final
Luxembourg,LU,2023-11-18,259,ECDC,2023-12-15,near final
Luxembourg,LU,2023-11-25,319,ECDC,2023-12-15,near final
Luxembourg,LU,2023-12-02,460,ECDC,2023-12-15,near final
Luxembourg,LU,2023-12-09,658,ECDC,2023-12-15,near final
Luxembourg,LU,2023-12-09,658,ECDC,2023-12-15,expecting revisions
Malta,MT,2020-01-04,0,ECDC,2022-08-12,final
Malta,MT,2020-01-11,0,ECDC,2022-08-12,final
Malta,MT,2020-01-18,0,ECDC,2022-08-12,final
Expand Down Expand Up @@ -4493,8 +4493,8 @@ Netherlands,NL,2023-10-28,837,ECDC,2023-12-15,final
Netherlands,NL,2023-11-04,920,ECDC,2023-12-15,final
Netherlands,NL,2023-11-11,903,ECDC,2023-12-15,final
Netherlands,NL,2023-11-18,868,ECDC,2023-12-15,near final
Netherlands,NL,2023-11-25,917,ECDC,2023-12-15,near final
Netherlands,NL,2023-12-02,1052,ECDC,2023-12-15,near final
Netherlands,NL,2023-11-25,917,ECDC,2023-12-15,expecting revisions
Netherlands,NL,2023-12-02,1052,ECDC,2023-12-15,expecting revisions
Netherlands,NL,2023-12-09,1190,ECDC,2023-12-15,expecting revisions
Norway,NO,2020-01-04,0,ECDC,2022-08-12,final
Norway,NO,2020-01-11,0,ECDC,2022-08-12,final
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8 changes: 4 additions & 4 deletions data-truth/ECDC/truth_ECDC-Incident Deaths.csv
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Expand Up @@ -1829,8 +1829,8 @@ Finland,FI,2023-10-28,116,ECDC,2023-12-15,final
Finland,FI,2023-11-04,164,ECDC,2023-12-15,final
Finland,FI,2023-11-11,204,ECDC,2023-12-15,final
Finland,FI,2023-11-18,108,ECDC,2023-12-15,near final
Finland,FI,2023-11-25,6,ECDC,2023-12-15,near final
Finland,FI,2023-12-02,6,ECDC,2023-12-15,near final
Finland,FI,2023-11-25,6,ECDC,2023-12-15,expecting revisions
Finland,FI,2023-12-02,6,ECDC,2023-12-15,expecting revisions
Finland,FI,2023-12-09,7,ECDC,2023-12-15,expecting revisions
France,FR,2020-01-04,0,ECDC,2022-08-12,final
France,FR,2020-01-11,0,ECDC,2022-08-12,final
Expand Down Expand Up @@ -5488,8 +5488,8 @@ Slovakia,SK,2023-10-14,1,ECDC,2023-11-17,final
Slovakia,SK,2023-10-28,5,ECDC,2023-12-15,final
Slovakia,SK,2023-11-04,4,ECDC,2023-12-15,final
Slovakia,SK,2023-11-11,3,ECDC,2023-12-15,final
Slovakia,SK,2023-11-18,4,ECDC,2023-12-15,near final
Slovakia,SK,2023-11-25,2,ECDC,2023-12-15,near final
Slovakia,SK,2023-11-18,4,ECDC,2023-12-15,expecting revisions
Slovakia,SK,2023-11-25,2,ECDC,2023-12-15,expecting revisions
Slovakia,SK,2023-12-02,1,ECDC,2023-12-15,expecting revisions
Slovakia,SK,2023-12-09,0,ECDC,2023-12-15,expecting revisions
Slovenia,SI,2020-01-04,0,ECDC,2022-08-12,final
Expand Down
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