Issue 757: Vectorise GP stan code #72
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: stan model benchmark | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: main | |
| paths: | |
| - inst/stan/** | |
| - .github/workflows/stan-model-benchmark.yaml | |
| - inst/dev/benchmark*.R | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }} | |
| cancel-in-progress: true | |
| jobs: | |
| stan-model-benchmark: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| extra-repositories: https://mc-stan.org/r-packages/ | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: | | |
| local::. | |
| here | |
| purrr | |
| cmdstanr | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2, quiet = TRUE) | |
| shell: Rscript {0} | |
| - name: Checkout main branch in parallel and move to separate dir | |
| run: | | |
| mv inst/stan inst/stan-branch | |
| git -c protocol.version=2 fetch --no-tags --prune --no-recurse-submodules --depth=1 origin main | |
| git checkout origin/main inst/stan | |
| mv inst/stan inst/stan-main | |
| mv inst/stan-branch inst/stan | |
| - name: Benchmark | |
| run: | | |
| Rscript inst/dev/benchmark.R | |
| - id: output | |
| name: Output to environment variable | |
| if: ${{ hashFiles('inst/dev/benchmark-results.md') != '' }} | |
| run: | | |
| echo 'BENCHMARK<<EOF' > $GITHUB_OUTPUT | |
| cat inst/dev/benchmark-results.md >> $GITHUB_OUTPUT | |
| echo 'EOF' >> $GITHUB_OUTPUT | |
| - name: Post comment | |
| if: ${{ hashFiles('inst/dev/benchmark-results.md') != '' }} | |
| uses: actions/github-script@v7 | |
| env: | |
| BENCHMARK: ${{ steps.output.outputs.BENCHMARK }} | |
| with: | |
| script: | | |
| github.rest.issues.createComment({ | |
| issue_number: context.issue.number, | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| body: process.env.BENCHMARK | |
| }) |