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seabbs committed Aug 14, 2024
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- Gaussian processes have been vectorised and the `gp_opts()` function has been updated to allow for the specification of a periodic kernel. By @seabbs in #742 and reviewed by @jamesmbaazam.
- Prior predictive checks have been used to update the following priors: the prior on the magnitude of the Gaussian process (from HalfNormal(0, 1) to HalfNormal(0, 0.1)), and the prior on the overdispersion (from 1 / HalfNormal(0, 1)^2 to 1 / HalfNormal(0, 0.25)). By @seabbs in #742 and reviewed by @jamesmbaazam.
- The default stan control options have been updated from `list(adapt_delta = 0.95, max_treedepth = 15)` to `list(adapt_delta = 0.9, max_treedepth = 12)` due to improved performance and to reduce the runtime of the default parameterisations. By @seabbs in #742 and reviewed by @jamesmbaazam.
- Initialisation has been simplified by sampling directly from the priors rather than from a constrained space (excluding the Gaussian process noise terms). By @seabbs in #742 and reviewed by @jamesmbaazam.
- Initialisation has been simplified by sampling directly from the priors, where possible, rather than from a constrained space. By @seabbs in #742 and reviewed by @jamesmbaazam.
- Unnecessary normalisation of delay priors has been removed. By @seabbs in #742 and reviewed by @jamesmbaazam.

## Bug fixes
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