{bio}[system/system] IGV v2.19.1 w/ Java 17

[pavelToman]

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#474

[github-actions]

Updated software IGV-2.19.1-Java-17.eb

Diff against IGV-2.17.4-Java-17.eb

easybuild/easyconfigs/i/IGV/IGV-2.17.4-Java-17.eb

diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.17.4-Java-17.eb b/easybuild/easyconfigs/i/IGV/IGV-2.19.1-Java-17.eb
index 35e427d0ad..9a2bc1d739 100644
--- a/easybuild/easyconfigs/i/IGV/IGV-2.17.4-Java-17.eb
+++ b/easybuild/easyconfigs/i/IGV/IGV-2.19.1-Java-17.eb
@@ -8,7 +8,7 @@
 easyblock = 'Tarball'
 
 name = 'IGV'
-version = '2.17.4'
+version = '2.19.1'
 versionsuffix = '-Java-%(javaver)s'
 
 homepage = 'https://www.broadinstitute.org/software/igv/'
@@ -20,7 +20,7 @@ toolchain = SYSTEM
 
 source_urls = ['http://data.broadinstitute.org/igv/projects/downloads/%(version_major)s.%(version_minor)s']
 sources = ['%(name)s_%(version)s.zip']
-checksums = ['6a36ae64fa3b74182db654a93f6254256305a8afa6b878f381b5d04fc1e8eaa5']
+checksums = ['e7d7803cab4e12e84f5359a3d73915a45acc6d676151ca18e91fb2d39432b568']
 
 dependencies = [('Java', '17', '', SYSTEM)]
 

Diff against IGV-2.16.0-Java-11.eb

easybuild/easyconfigs/i/IGV/IGV-2.16.0-Java-11.eb

diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.16.0-Java-11.eb b/easybuild/easyconfigs/i/IGV/IGV-2.19.1-Java-17.eb
old mode 100755
new mode 100644
index d30a9dbd0f..9a2bc1d739
--- a/easybuild/easyconfigs/i/IGV/IGV-2.16.0-Java-11.eb
+++ b/easybuild/easyconfigs/i/IGV/IGV-2.19.1-Java-17.eb
@@ -8,7 +8,7 @@
 easyblock = 'Tarball'
 
 name = 'IGV'
-version = '2.16.0'
+version = '2.19.1'
 versionsuffix = '-Java-%(javaver)s'
 
 homepage = 'https://www.broadinstitute.org/software/igv/'
@@ -20,9 +20,9 @@ toolchain = SYSTEM
 
 source_urls = ['http://data.broadinstitute.org/igv/projects/downloads/%(version_major)s.%(version_minor)s']
 sources = ['%(name)s_%(version)s.zip']
-checksums = ['7fe76a793b1aa9ac90a1733acfe4ea01fd8e7e42729e9daee84e79e1f43b2a26']
+checksums = ['e7d7803cab4e12e84f5359a3d73915a45acc6d676151ca18e91fb2d39432b568']
 
-dependencies = [('Java', '11', '', SYSTEM)]
+dependencies = [('Java', '17', '', SYSTEM)]
 
 sanity_check_paths = {
     'files': ['%(namelower)s.sh', 'lib/%(namelower)s.jar'],

Diff against IGV-2.12.3-Java-11.eb

easybuild/easyconfigs/i/IGV/IGV-2.12.3-Java-11.eb

diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.12.3-Java-11.eb b/easybuild/easyconfigs/i/IGV/IGV-2.19.1-Java-17.eb
index 7e992b8bba..9a2bc1d739 100644
--- a/easybuild/easyconfigs/i/IGV/IGV-2.12.3-Java-11.eb
+++ b/easybuild/easyconfigs/i/IGV/IGV-2.19.1-Java-17.eb
@@ -8,7 +8,7 @@
 easyblock = 'Tarball'
 
 name = 'IGV'
-version = '2.12.3'
+version = '2.19.1'
 versionsuffix = '-Java-%(javaver)s'
 
 homepage = 'https://www.broadinstitute.org/software/igv/'
@@ -20,9 +20,9 @@ toolchain = SYSTEM
 
 source_urls = ['http://data.broadinstitute.org/igv/projects/downloads/%(version_major)s.%(version_minor)s']
 sources = ['%(name)s_%(version)s.zip']
-checksums = ['c87a109deb35994e1b28dee80b5acfd623ec3257f031fcd9cfce008cd32a4cf2']
+checksums = ['e7d7803cab4e12e84f5359a3d73915a45acc6d676151ca18e91fb2d39432b568']
 
-dependencies = [('Java', '11', '', SYSTEM)]
+dependencies = [('Java', '17', '', SYSTEM)]
 
 sanity_check_paths = {
     'files': ['%(namelower)s.sh', 'lib/%(namelower)s.jar'],

[pavelToman]

@boegelbot please test @ generoso

[boegelbot]

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=22043 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_22043 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 14879

Test results coming soon (I hope)...

- notification for comment with ID 2548593217 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/b25129da541bb5666b3fc3772a06e29d for a full test report.

[pavelToman]

@boegelbot please test @ jsc-zen3

[boegelbot]

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22043 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22043 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 5456

Test results coming soon (I hope)...

- notification for comment with ID 2548619714 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/56529131ab874ce0654e04ac982a23af for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3105.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/614852a8bdf2e79bf3bc26c0ffd336ce for a full test report.

[Micket]

lgtm