Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Trim_Galore, IGV (, deeptools) #474

Open
2 tasks
laraPPr opened this issue Dec 16, 2024 · 4 comments · Fixed by easybuilders/easybuild-easyconfigs#22043
Open
2 tasks

Trim_Galore, IGV (, deeptools) #474

laraPPr opened this issue Dec 16, 2024 · 4 comments · Fixed by easybuilders/easybuild-easyconfigs#22043
Assignees
@pavelToman
Labels
difficulty: easy software that should be easy to support easyconfig Easyconfig is available priority: ASAP site:ugent Software installation request for UGent Tier-2 update

Comments

@laraPPr
Copy link
Collaborator

laraPPr commented Dec 16, 2024

@laraPPr laraPPr added difficulty: easy software that should be easy to support priority: ASAP update site:ugent Software installation request for UGent Tier-2 easyconfig Easyconfig is available labels Dec 16, 2024
@pavelToman pavelToman self-assigned this Dec 17, 2024
@pavelToman
Copy link
Collaborator

pavelToman commented Dec 17, 2024 •
edited
Loading

There is Trim_Galore v0.6.10 (latest) for 12.3.0 and so for RHEL9: https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.6.10-GCCcore-12.3.0.eb

@pavelToman
Copy link
Collaborator

IGV is toolchain = SYSTEM so it should be compatible with RHEL9 either. There is a new version 2.19.1.

@pavelToman
Copy link
Collaborator

deepTools has EC for foss/2023a so compatible with RHEL9. Version is v3.5.5 (leatest)

pavelToman added a commit that referenced this issue Dec 17, 2024
@pavelToman
#474 IGV PR version
28a71d5
@pavelToman
Copy link
Collaborator

PR IGV:

@pavelToman pavelToman mentioned this issue Dec 17, 2024
Merged
pavelToman added a commit that referenced this issue Dec 19, 2024
@pavelToman
#474 done - cleanup
dd07596
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@pavelToman pavelToman

Labels
difficulty: easy software that should be easy to support easyconfig Easyconfig is available priority: ASAP site:ugent Software installation request for UGent Tier-2 update
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

{bio}[system/system] IGV v2.19.1 w/ Java 17 pavelToman/easybuild-easyconfigs
2 participants
@laraPPr @pavelToman