add back patch required for Tombo-1.5.1-foss-2023a.eb

easybuilders · Dec 18, 2024 · ab22c93 · ab22c93
1 parent b2e7ee7
commit ab22c93
Showing 1 changed file with 14 additions and 0 deletions.
diff --git a/easybuild/easyconfigs/t/Tombo/Tombo-1.5.1_rpy2-v3.patch b/easybuild/easyconfigs/t/Tombo/Tombo-1.5.1_rpy2-v3.patch
@@ -0,0 +1,14 @@
+Fix Tombo for use with rpy2 v3 by initialising the DataFrame with a dict
+https://github.com/nanoporetech/tombo/issues/208
+Patch prepared for EasyBuild by Simon Branford, University of Birmingham
+--- tombo/_plot_commands.py.orig	2020-12-16 14:28:04.891944000 +0000
++++ tombo/_plot_commands.py	2020-12-16 14:28:14.682304346 +0000
+@@ -44,7 +44,7 @@
+ try:
+     from rpy2 import robjects as r
+     from rpy2.robjects.packages import importr
+-    _R_DF = r.DataFrame(())
++    _R_DF = r.DataFrame({})
+ except:
+     # pass here and print detailed error when main functions are actually called
+     # in  to give specific error message