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Issues list

experimental cellxgene-schema CLI must support C. elegans 5.2.1-experimental curation software multispecies discovery Adding new species to CELLxGENE
#1128 opened Nov 22, 2024 by brianraymor
@nayib-jose-gloria
experimental cellxgene-schema CLI must update gene references to Ensembl 113 release 5.2.1-experimental curation software multispecies discovery Adding new species to CELLxGENE
#1127 opened Nov 22, 2024 by brianraymor
3 tasks
move stateful checks (e.g. is_visium, is_single) higher up in the validator to avoid potential state-related issues curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1125 opened Nov 21, 2024 by ejmolinelli
5 tasks
Draft Sus scrofa domesticus (domestic pig) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE orthologous schema CELLxGENE Discover dataset schema
#1122 opened Nov 20, 2024 by brianraymor
Draft Pan troglodytes (chimpanzee) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE orthologous schema CELLxGENE Discover dataset schema
#1121 opened Nov 20, 2024 by brianraymor
Draft Gorilla gorilla (western gorilla) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE orthologous schema CELLxGENE Discover dataset schema
#1120 opened Nov 20, 2024 by brianraymor
@brianraymor
cellxgene-schema CLI must add validation for obs['genetic_ancestry_*'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1114 opened Nov 18, 2024 by brianraymor
@joyceyan
1
cellxgene-schema CLI must update validation for uns['spatial'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1107 opened Nov 14, 2024 by brianraymor
@ejmolinelli
1
cellxgene-schema CLI must update validation for obsm['X_{suffix}'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1106 opened Nov 14, 2024 by brianraymor
@ejmolinelli
cellxgene-schema CLI must update validation for obs['assay_ontology_term_id'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1102 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must update validation for obs['array_row'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1101 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must update validation for obs['array_col'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1100 opened Nov 14, 2024 by brianraymor
cellxgene-schema must update validation for X (Matrix Layers) 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1099 opened Nov 14, 2024 by brianraymor
@ejmolinelli
5
cellxgene-schema CLI must support Visium CytAssist Spatial Gene Expression 5.3 Next minor CELLxGENE schema version after 5.2 curation software Epic
#1098 opened Nov 14, 2024 by brianraymor
@ejmolinelli
bug: anndata 0.11.0 breaking CLI bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1096 opened Nov 14, 2024 by Bento007
Human Brain Cell Atlas - revise cell_type annotation curation Updates to published datasets
#1093 opened Nov 13, 2024 by jahilton
@jahilton
1
Draft Microcebus murinus (gray mouse lemur) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1091 opened Nov 5, 2024 by brianraymor
cellxgene-schema CLI is not correctly enforcing obs['is_primary_data'] bug Something isn't working curation software dp Data Platform Team work
#1076 opened Oct 30, 2024 by brianraymor
1
Breaking change: one organism per dataset with matching feature reference 6.0 Next major CELLxGENE schema version multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1074 opened Oct 28, 2024 by brianraymor
@brianraymor
5
Discovery for Productionalizing Multi-Species Validator Epic
#1058 opened Oct 22, 2024 by nayib-jose-gloria
Investigate integrating a more flexible, established third-party validation tool P1
#1055 opened Oct 22, 2024 by nayib-jose-gloria
Package experimental validator CLI such that user can easily install + validate against their desired schema
#1054 opened Oct 22, 2024 by nayib-jose-gloria
Dataset MUST NOT contain duplicate obs, by raw counts 5.4 Next minor CELLxGENE schema version after 5.3 schema CELLxGENE Discover dataset schema
#1037 opened Oct 17, 2024 by jahilton
Draft "General species" requirements multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1036 opened Oct 15, 2024 by brianraymor
@brianraymor
Evolve development_stage_ontology_term_id to support multiple species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1033 opened Oct 10, 2024 by brianraymor
@brianraymor
3
ProTip! What’s not been updated in a month: updated:<2024-10-28.