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Prepare for cellfinder merge #54

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merged 9 commits into from
Jan 3, 2024
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@willGraham01 willGraham01 commented Dec 13, 2023

See brainglobe/BrainGlobe#46

Prepares the package for the update to cellfinder

  • cellfinder_core -> cellfinder.core everywhere
  • tox environment now fetches development version of cellfinder, if requested
  • pyproject hard-depends on cellfinder>=1.0.0. napari optional dependency is still available.
  • The CLI tool cellfinder is now called brainmapper.

On merge, create new released on PyPI

@willGraham01 willGraham01 force-pushed the prepare-for-cellfinder-update branch 2 times, most recently from d27d9c1 to df16e45 Compare December 20, 2023 10:34
With the removal of tox.ini from main branch, also remove the now-redundant check on the development version of cellfinder
@willGraham01 willGraham01 force-pushed the prepare-for-cellfinder-update branch from df16e45 to 4a2c551 Compare January 2, 2024 11:53
@willGraham01 willGraham01 marked this pull request as ready for review January 3, 2024 13:40
@willGraham01 willGraham01 requested a review from a team January 3, 2024 13:41
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codecov bot commented Jan 3, 2024

Codecov Report

Attention: 2 lines in your changes are missing coverage. Please review.

Comparison is base (0d99ec4) 81.33% compared to head (036b083) 81.33%.

❗ Current head 036b083 differs from pull request most recent head a41280a. Consider uploading reports for the commit a41280a to get more accurate results

Files Patch % Lines
benchmarks/cellfinder_core.py 0.00% 2 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main      #54   +/-   ##
=======================================
  Coverage   81.33%   81.33%           
=======================================
  Files          32       32           
  Lines        1586     1586           
=======================================
  Hits         1290     1290           
  Misses        296      296           

☔ View full report in Codecov by Sentry.
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@adamltyson adamltyson left a comment

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LGTM. I made some small changes to the readme and suggested another.

README.md Outdated Show resolved Hide resolved
Co-authored-by: Adam Tyson <[email protected]>
@willGraham01
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Fab, will merge when https://github.com/brainglobe/brainglobe-workflows/actions/runs/7396094521 completes. (This is running on 036b083, which is the last edit to the actual code, and I don't fancy waiting another 4 hours for the tests to pass again).

@willGraham01 willGraham01 merged commit 2da996a into main Jan 3, 2024
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@willGraham01 willGraham01 deleted the prepare-for-cellfinder-update branch January 3, 2024 15:51
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2 participants