Phigaro 2.4.0

• Restored a compatibility with Python versions >3.7.1.
• .pickle files, containing data neccasary for the work of the tool, were replaced with .json and .csv files to resolve installation issues.
• Added prophage IDs across outputs to improve compatibility between files.
• Fixed a bug with gff3 and bed files formats: prophage coordinates were shifted by 1 nucleotide upstream in versions phigaro <= 2.3.0.

Phigaro 2.3.0

Added a --save-fasta option.

Phigaro 2.2.6

Minor corrections.
Docker & Singularity containers.
What_the_phage implementation.

Phigaro 2.2.5

A locate exception was added. So, if the user does not have this tool the configuration of Phigaro will not fail.

Phigaro 2.2.4-1

Minor corrections and optional temporary files saving

Phigaro 2.2.3

Code style: black. Output parameter corrections.

Phigaro 2.2.1

Updated thresholds for abs and without_gc modes.

Phigaro 2.2.0

Added: 3 modes - basic, without considering GC content and considering absolute deviation of GC content.

Phigaro 2.1.10

Added: bed, gff output options

Phigaro 2.1.9

v2.1.9

version update