Skip to content

Releases: biodiversitydata-se/coidb

Version 0.5.2

11 May 21:27
9926533
Compare
Choose a tag to compare

What's Changed

Full Changelog: v0.5.1...v0.5.2

Version 0.5.1

09 May 05:01
fbe2dd9
Compare
Choose a tag to compare

What's Changed

  • Add possibility to generate subsequences of references matching amplicon region (EXPERIMENTAL)
  • Update links to GBIF release in default config
  • Update BOLD bin column used in latest GBIF release
  • Add touch Snakemake option

Full Changelog: v0.4.8...v0.5.1

Version 0.4.8

22 Dec 21:37
aad956d
Compare
Choose a tag to compare
  • Set default identity threshold to 1.0
  • Add script to format output for sintax

Version 0.4.7

20 Aug 06:52
5d87862
Compare
Choose a tag to compare
  • Increase threads in clustering rule
  • Remove reference to cluster.yml file in clustering rule

Version 0.4.6

19 May 21:28
b38459c
Compare
Choose a tag to compare

Update non-uniqueness strategy

What's Changed

Full Changelog: v0.4.5...v0.4.6

Version 0.4.5

15 Feb 23:19
e5502a2
Compare
Choose a tag to compare
v0.4.5

Version bump

Version 0.4.3

10 Feb 20:15
5010243
Compare
Choose a tag to compare
Merge pull request #14 from johnne/devel

Fix scripts path

Version 0.4.1

10 Feb 08:19
85a95f3
Compare
Choose a tag to compare
Merge pull request #12 from johnne/devel

Slim dataframe and only run fill_unassigned for necessary bins

Version 0.4.0

08 Feb 19:57
fe08f80
Compare
Choose a tag to compare

Merge devel branch

Changelog:

  • Change to using setup.cfg
  • Make use of GBIF backbone taxonomy
  • Better handling of intermediate ranks
  • Trim sequences using seqkit(faster)

Version 0.3.3

18 Dec 10:46
ca28f41
Compare
Choose a tag to compare

Changelog:

  • Add cleaning rule to strip vsearch specific strings from fasta