Merge pull request #722 from nithujohn/master

change SDRF nonvertebrates to invertebrates
bigbio · Sep 11, 2024 · 90cbf62 · 90cbf62
2 parents 3a13234 + 370b997
commit 90cbf62
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diff --git a/psi-document/SDRF_Proteomics_Specification_v1.0.0.pdf b/psi-document/SDRF_Proteomics_Specification_v1.0.0.pdf
diff --git a/templates/README.adoc b/templates/README.adoc
@@ -8,7 +8,7 @@ NOTE: It is planned that, unlike in other PSI formats, regular updates will need
 - **Default proteomics experiment**: Minimum information for any proteomics experiment https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-default.tsv[Template]
 - **Human experiment**: All tissue-based experiments that use Human samples https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-human.tsv[Template]
 - **Vertebrates experiment**: Vertebrate experiment. https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-vertebrates.tsv[Template]
-- **Non-vertebrates experiment**: Non-vertebrate experiment. https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-nonvertebrates.tsv[Template]
+- **Invertebrates experiment**: Invertebrate experiment. https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-invertebrates.tsv[Template]
 - **Plants experiment**: Plant experiment. https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-plants.tsv[Template]
 - **Cell lines experiment**: Experiments using cell-lines. https://github.com/bigbio/proteomics-metadata-standard/blob/master/templates/sdrf-cell-line.tsv[Template]
 
@@ -17,7 +17,7 @@ NOTE: Each of the templates is a tsv file with the minimum columns to describe t
 *Sample attributes*: Minimum sample attributes for primary cells from different species and cell lines
 
 |===
-|                                       | Default            |Human              | Vertebrates       | Non-vertebrates   | Plants            | Cell lines
+|                                       | Default            |Human              | Vertebrates       | Invertebrates   | Plants            | Cell lines
 |source name                            | :white_check_mark: |:white_check_mark: |:white_check_mark: |:white_check_mark: |:white_check_mark: |:white_check_mark:
 |characteristics[organism]              | :white_check_mark: |:white_check_mark: |:white_check_mark: |:white_check_mark: |:white_check_mark: |:white_check_mark:
 |characteristics[strain/breed]          |                    |                   |                   |:zero:             |                   |:zero:

diff --git a/templates/sdrf-invertebrates.sdrf.tsv b/templates/sdrf-invertebrates.sdrf.tsv
@@ -0,0 +1 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[disease]	characteristics[cell type]	characteristics[biological replicate]	technology type	assay name	comment[technical replicate]	comment[data file]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[cleavage agent details]