Merge pull request #718 from bigbio/dev

Definition of Data acquisition method in the specification [DO NOT MERGE]

README.md

@@ -1,6 +1,6 @@
 # Proteomics Sample Metadata Format
 
-[![Version](https://flat.badgen.net/static/sdrf-proteomics/1.0.0/orange)](CHANGELOG.md)
+[![Version](https://flat.badgen.net/static/sdrf-proteomics/1.0.1/orange)](CHANGELOG.md)
 [![License](https://flat.badgen.net/github/license/bigbio/proteomics-metadata-standard)](https://github.com/bigbio/proteomics-metadata-standard/blob/master/LICENSE)
 [![Open Issues](https://flat.badgen.net/github/open-issues/HUPO-PSI/mzSpecLib)](https://github.com/bigbio/proteomics-metadata-standard/issues)
 [![Open PRs](https://flat.badgen.net/github/open-prs/bigbio/proteomics-metadata-standard)](https://github.com/bigbio/proteomics-metadata-standard/pulls)

annotated-projects/PXD020187/PXD020187.sdrf.tsv

@@ -1,4 +1,4 @@
-source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[region]	characteristics[age]	characteristics[ancestry category]	characteristics[sex]	characteristics[disease]	characteristics[biological replicate]	characteristics[individual]	characteristics[proteomexchange accession number]	assay name	comment[data file]	comment[file uri]	comment[technial replicate]	comment[fraction identifier]	comment[instrument]	comment[modification parameters]	comment[modification parameters]	comment[cleavage agent details]	comment[label]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	factor value[disease]
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[region]	characteristics[age]	characteristics[ancestry category]	characteristics[sex]	characteristics[disease]	characteristics[biological replicate]	characteristics[individual]	characteristics[proteomexchange accession number]	assay name	comment[data file]	comment[file uri]	comment[technical replicate]	comment[fraction identifier]	comment[instrument]	comment[modification parameters]	comment[modification parameters]	comment[cleavage agent details]	comment[label]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	factor value[disease]
 Sample 1	homo sapiens	human umbilical cord (hUC)	not available	decellularized human umbilical arteries (hUAs)	not available	not available	not available	native_1	1	1	PXD020187	run 1	D1_Nat_1.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD020187/D1_Nat_1.raw	1	1	AC=MS:1000447;NT=LTQ	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35	AC=MS:1001251;NT=Trypsin	label free	10 ppm	0.05 Da	native_1
 Sample 1	homo sapiens	human umbilical cord (hUC)	not available	decellularized human umbilical arteries (hUAs)	not available	not available	not available	native_2	1	1	PXD020187	run 2	D2_Nat_2.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD020187/D2_Nat_2.raw	1	1	AC=MS:1000447;NT=LTQ	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:36	AC=MS:1001251;NT=Trypsin	label free	10 ppm	0.05 Da	native_2
 Sample 1	homo sapiens	human umbilical cord (hUC)	not available	decellularized human umbilical arteries (hUAs)	not available	not available	not available	native_3	1	1	PXD020187	run 3	D3_Nat_3.raw	https://ftp.pride.ebi.ac.uk/pride/data/archive/2020/08/PXD020187/D3_Nat_3.raw	1	1	AC=MS:1000447;NT=LTQ	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:37	AC=MS:1001251;NT=Trypsin	label free	10 ppm	0.05 Da	native_3

annotated-projects/PXD023707/PXD023707.sdrf.tsv

@@ -1,4 +1,4 @@
 source name	characteristics[biological replicate]	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[age]	characteristics[ancestry category]	characteristics[sex]	characteristics[disease]	characteristics[individual]	characteristics[enrichment process]	assay name	technology type	comment[cleavage agent details]	comment[cleavage agent details]	comment[cleavage agent details]	comment[fractionation method]	comment[fraction identifier]	comment[fragment mass tolerance]	comment[precursor mass tolerance]	comment[technical replicate]	comment[instrument]	comment[label]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[tool metadata]	comment[file uri]	comment[data file]	factor value[disease]
-fallopian tube sample	1	homo sapiens	fallopian tube	fallopian tube ciliated cell	43Y	caucasian	F	cancer or benign tumor	1	NT= Extraction purification;AC=NCIT:C113061	run 1	proteomic profilling by mass spectrometry	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=N-glycosidase F;AC=CHMO:0002921	not applicable	not applicable	0.20 Da	10 ppm	1	NT=Q Exactive HF;AC=MS:1002523	label free sample	NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C	NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q	NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P	NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110	NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805	lesSDRF v0.1.0	https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201009_MSC419_1.raw	20201009_MSC419_1.raw	cancer or benign tumor
-fallopian tube sample	1	homo sapiens	fallopian tube	fallopian tube ciliated cell	43Y	caucasian	F	cancer or benign tumor	1	NT= Extraction purification;AC=NCIT:C113061	run 2	proteomic profilling by mass spectrometry	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=N-glycosidase F;AC=CHMO:0002921	not applicable	not applicable	0.20 Da	10 ppm	2	NT=Q Exactive HF;AC=MS:1002523	label free sample	NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C	NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q	NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P	NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110	NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805	lesSDRF v0.1.0	https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-2.raw	20201114_MSC419_1-2.raw	cancer or benign tumor
-fallopian tube sample	1	homo sapeins	fallopian tube	fallopian tube ciliated cell	43Y	caucasian	F	cancer or benign tumor	1	NT= Extraction purification;AC=NCIT:C113061	run 3	proteomic profilling by mass spectrometry	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=N-glycosidase F;AC=CHMO:0002921	not applicable	not applicable	0.20 Da	10 ppm	3	NT=Q Exactive HF;AC=MS:1002523	label free sample	NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464;MT=Fixed;PP=Anywhere;TA=C	NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q	NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P	NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110	NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805	lesSDRF v0.1.0	https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-3.raw	20201114_MSC419_1-3.raw	cancer or benign tumor
+fallopian tube sample	1	homo sapiens	fallopian tube	fallopian tube ciliated cell	43Y	caucasian	F	cancer or benign tumor	1	NT= Extraction purification;AC=NCIT:C113061	run 1	proteomic profilling by mass spectrometry	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=N-glycosidase F;AC=CHMO:0002921	not applicable	not applicable	0.20 Da	10 ppm	1	NT=Q Exactive HF;AC=MS:1002523	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=C	NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q	NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P	NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110	NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805	lesSDRF v0.1.0	https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201009_MSC419_1.raw	20201009_MSC419_1.raw	cancer or benign tumor
+fallopian tube sample	1	homo sapiens	fallopian tube	fallopian tube ciliated cell	43Y	caucasian	F	cancer or benign tumor	1	NT= Extraction purification;AC=NCIT:C113061	run 2	proteomic profilling by mass spectrometry	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=N-glycosidase F;AC=CHMO:0002921	not applicable	not applicable	0.20 Da	10 ppm	2	NT=Q Exactive HF;AC=MS:1002523	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=C	NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q	NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P	NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110	NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805	lesSDRF v0.1.0	https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-2.raw	20201114_MSC419_1-2.raw	cancer or benign tumor
+fallopian tube sample	1	homo sapiens	fallopian tube	fallopian tube ciliated cell	43Y	caucasian	F	cancer or benign tumor	1	NT= Extraction purification;AC=NCIT:C113061	run 3	proteomic profilling by mass spectrometry	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=N-glycosidase F;AC=CHMO:0002921	not applicable	not applicable	0.20 Da	10 ppm	3	NT=Q Exactive HF;AC=MS:1002523	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=C	NT=Gln->pyro-Glu;AC=Unimod:28;MT=Variable;PP=Protein N-term;TA=Q	NT=Deamidated;AC=Unimod:7;MT=Variable;PP=Anywhere;TA=N','Q	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=M,K,P	NT=Lys-> Pyl ;MT=Fixed;PP=Anywhere;TA=K;CF=C12H21N3O3;MM=-110	NT=Delta: S(-1)Se(1);MT=Fixed;PP=Anywhere;TA=C;CF=C3H7NO2Se;MM=49; PMID= 12148805	lesSDRF v0.1.0	https://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD023707/20201114_MSC419_1-3.raw	20201114_MSC419_1-3.raw	cancer or benign tumor

annotated-projects/PXD051889/PXD051889.sdrf.tsv

@@ -0,0 +1,17 @@
+source name	characteristics[age]	characteristics[ancestry category]	characteristics[biological replicate]	characteristics[cell type]	characteristics[compound]	characteristics[developmental stage]	characteristics[disease]	characteristics[enrichment process]	characteristics[individual]	characteristics[organism part]	characteristics[organism]	characteristics[sex]	technology type	assay name	comment[cleavage agent details]	comment[data file]	comment[fraction identifier]	comment[fragment mass tolerance]	comment[instrument]	comment[label]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[modification parameters]	comment[precursor mass tolerance]	comment[technical replicate]	comment[tool metadata]
+214	Not available	Not available	1	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	1	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 1	NT=Trypsin/P	QX32029GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+226	Not available	Not available	2	not applicable	Vehicle	Not applicable	Not applicable	enrichment of phosphorylated protein	2	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 2	NT=Trypsin/P	QX32032GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+229	Not available	Not available	3	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	3	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 3	NT=Trypsin/P	QX32035GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+221	Not available	Not available	4	not applicable	Vehicle	Not applicable	Not applicable	enrichment of phosphorylated protein	4	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 4	NT=Trypsin/P	QX32038GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+459	Not available	Not available	5	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	5	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 5	NT=Trypsin/P	QX32041GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+322	Not available	Not available	6	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	6	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 6	NT=Trypsin/P	QX32044GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+223	Not available	Not available	7	not applicable	Vehicle	Not applicable	Not applicable	enrichment of phosphorylated protein	7	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 7	NT=Trypsin/P	QX32047GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+460	Not available	Not available	8	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	8	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 8	NT=Trypsin/P	QX32050GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+234	Not available	Not available	9	not applicable	Vehicle	Not applicable	Not applicable	enrichment of phosphorylated protein	9	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 9	NT=Trypsin/P	QX32053GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+323	Not available	Not available	10	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	10	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 10	NT=Trypsin/P	QX32056GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+227	Not available	Not available	11	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	11	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 11	NT=Trypsin/P	QX32059GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+228	Not available	Not available	12	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	12	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 12	NT=Trypsin/P	QX32062GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+321	Not available	Not available	13	not applicable	Vehicle	Not applicable	Not applicable	enrichment of phosphorylated protein	13	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 13	NT=Trypsin/P	QX32065GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+319	Not available	Not available	14	not applicable	Trametinib	Not applicable	Not applicable	enrichment of phosphorylated protein	14	brain	Mus musculus	M	proteomic profiling by mass spectrometry	Run 14	NT=Trypsin/P	QX32068GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+217	Not available	Not available	15	not applicable	Vehicle	Not applicable	Not applicable	enrichment of phosphorylated protein	15	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 15	NT=Trypsin/P	QX32071GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0
+224	Not available	Not available	16	not applicable	Vehicle	Not applicable	Not applicable	enrichment of phosphorylated protein	16	brain	Mus musculus	F	proteomic profiling by mass spectrometry	Run 16	NT=Trypsin/P	QX32074GM	1	20 ppm	Q Exactive HF-X	label free sample	NT=Carbamidomethyl;AC=Unimod:4;MT=Fixed;PP=Anywhere;TA=['C']	NT=Acetyl;AC=Unimod:1;MT=Variable;PP=Protein N-term;TA=[]	NT=Oxidation;AC=Unimod:35;MT=Variable;PP=Anywhere;TA=['M']	NT=Phospho;AC=Unimod:21;MT=Variable;PP=Anywhere;TA=S,Y,T	4.5 ppm	1	lesSDRF v0.1.0