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(chore) (HCT, HP, Covid): Use concept keys from the schema for better configurability. #1863

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Jun 13, 2024
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@ import { getObsFromEncounter, findObs } from './encounter-list-utils';
export const renderTag = (encounter, concept, statusColorMappings) => {
const columnStatus = getObsFromEncounter(encounter, concept);
const columnStatusObs = findObs(encounter, concept);

if (columnStatus == '--') {
return '--';
} else {
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,11 @@ import {
getConceptFromMappings,
} from './encounter-list-utils';
import { renderTag } from './encounter-list-component-util';
import { extractSchemaValues, replaceWithConfigDefaults } from './schema-manipulation';

interface ConfigSchema {
[key: string]: { [key: string]: string | Array<string> };
}

interface MenuProps {
menuId: string;
Expand Down Expand Up @@ -142,8 +147,13 @@ export const getTabColumns = (columnsDefinition: Array<ColumnDefinition>) => {
return columns;
};

export const getMenuItemTabConfiguration = (schemaConfig: MenuProps) => {
const tabs = schemaConfig.tabDefinitions.map((tab) => {
export const getMenuItemTabConfiguration = (schemaConfig: MenuProps, configSchema?: ConfigSchema) => {
// gonna make the configSchema optional for now until we implement it everywher
const configDefaults = extractSchemaValues(configSchema);

const transformedSchemaConfig = replaceWithConfigDefaults(schemaConfig, configDefaults);

const tabs = (configSchema ? transformedSchemaConfig.tabDefinitions : schemaConfig.tabDefinitions).map((tab) => {
return {
name: tab.tabName,
hasFilter: tab.hasFilter || false,
Expand Down
16 changes: 13 additions & 3 deletions packages/esm-commons-lib/src/utils/encounter-list-utils.ts
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,12 @@ export function getObsFromEncounters(encounters, obsConcept) {

export function resolveValueUsingMappings(encounter, concept, mappings) {
const obs = findObs(encounter, concept);
return obs ? mappings[obs.value.uuid] || obs.value : '--';
for (const key in mappings) {
if (mappings[key] === obs?.value?.uuid) {
return key;
}
}
return '--';
}

export function getConceptFromMappings(encounter, concepts) {
Expand Down Expand Up @@ -77,10 +82,15 @@ export function getObsFromEncounter(
let obs = findObs(encounter, obsConcept);

if (isTrueFalseConcept) {
if (obs?.value?.uuid == 'cf82933b-3f3f-45e7-a5ab-5d31aaee3da3') {
if (
(obs?.value?.uuid != 'cf82933b-3f3f-45e7-a5ab-5d31aaee3da3' && obs?.value?.name?.name !== 'Unknown') ||
obs?.value?.name?.name === 'FALSE'
) {
return 'No';
} else if (obs?.value?.uuid == 'cf82933b-3f3f-45e7-a5ab-5d31aaee3da3') {
return 'Yes';
} else {
return 'No';
return obs?.value?.name?.name;
}
}

Expand Down
47 changes: 47 additions & 0 deletions packages/esm-commons-lib/src/utils/schema-manipulation.ts
Original file line number Diff line number Diff line change
@@ -0,0 +1,47 @@
export function extractSchemaValues(schema) {
const result = {};
function traverse(obj) {
Object.entries(obj).forEach(([key, value]) => {
if (typeof value === 'object' && !Array.isArray(value)) {
traverse(value);
} else {
result[key] = value;
}
});
}

traverse(schema);
return result;
}

export function replaceWithConfigDefaults(obj, configDefaults) {
if (Array.isArray(obj)) {
return obj.map((item) => {
if (typeof item === 'string' && configDefaults.hasOwnProperty(item)) {
return configDefaults[item];
} else {
return replaceWithConfigDefaults(item, configDefaults);
}
});
} else if (typeof obj === 'object' && obj !== null) {
const newObj = {};
for (const key in obj) {
if (typeof obj[key] === 'string') {
if (configDefaults.hasOwnProperty(key)) {
// Case where UUID is the value
newObj[configDefaults[key]] = obj[key];
} else if (configDefaults.hasOwnProperty(obj[key])) {
// Case where UUID is the key
newObj[key] = configDefaults[obj[key]];
} else {
newObj[key] = obj[key];
}
} else {
newObj[key] = replaceWithConfigDefaults(obj[key], configDefaults);
}
}
return newObj;
} else {
return obj;
}
}
10 changes: 4 additions & 6 deletions packages/esm-covid-app/src/config-schema.ts
Original file line number Diff line number Diff line change
Expand Up @@ -21,20 +21,15 @@ export const configSchema = {
covidTypeofTestConcept_UUID: '069f6dfe-88c1-4a45-a894-0d99549c8718',
covidSpecimenCollectionDate_UUID: '159951AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidOutcomeUUID: 'a845f3e6-4432-4de4-9fff-37fa270b1a06',
covidTestType: '069f6dfe-88c1-4a45-a894-0d99549c8718',
covidOutcome: 'a845f3e6-4432-4de4-9fff-37fa270b1a06',
rapidAntigenResultDate: 'af159c77-bc5d-46dd-90d9-bcbffb22267f',
covidTreatementOutConcept_UUID: 'a845f3e6-4432-4de4-9fff-37fa270b1a06',
covidRapidTestResultDate_UUID: 'af159c77-bc5d-46dd-90d9-bcbffb22267f',
pcrTestResultDate: '4a77ab44-0323-490e-96be-e168c0e5c9de',
finalCovid19Result: '5da5c21b-969f-41bd-9091-e40d4c707544',
covidOutcomesCohortUUID: 'afb0d950-48fd-44d7-ae2c-79615cd125f0',
covidDiagnorticPcrResultDate_UUID: '4a77ab44-0323-490e-96be-e168c0e5c9de',
htsRetrospectiveEncounterType: '79c1f50f-f77d-42e2-ad2a-d29304dde2fe',
htsRetrospectiveType: '79c1f50f-f77d-42e2-ad2a-d29304dde2fe',
pcrTestResult: '3f4ee14b-b4ab-4597-9fe9-406883b63d76',
covidReasonsForTestingConcep_UUID: 'ae46f4b1-c15d-4bba-ab41-b9157b82b0ce',
covidDiagnosticPcrResult_UUID: '3f4ee14b-b4ab-4597-9fe9-406883b63d76',
covidTestResultUUID: '3f4ee14b-b4ab-4597-9fe9-406883b63d76',
covidPatientStatusUUID: 'de3bc9b7-05b5-41b6-a38d-8d2eec646c4f',
covidSARS_TestResultConcept_UUID: '89feed9c-1dd9-477a-ab1c-86f5f75f6762',
Expand Down Expand Up @@ -66,6 +61,10 @@ export const configSchema = {
covidVaccineAdministeredConcept_UUID: 'e41fbe17-4aee-4a44-950b-6676d6e0ede2',
covidVaccineConcept_UUID: '0cc868bd-e9dd-4b59-b278-f923afe22d82',
covidVaccineSeriesConcept_UUID: '45b3959d-f897-4e01-b6e5-16ef6ae0a687',
covidNotDoneStatus: '1118AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidCompletedStatus: '1267AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidCancelledStatus: '165170AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
covidPendingStatus: '162866AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
},
},
cohorts: {
Expand Down Expand Up @@ -109,7 +108,6 @@ export const configSchema = {
covidLabResultFormUuid: 'cf8cd756-baef-38df-b84d-92968b42c113',
covidLabCancellationFormUuid: 'd38bc949-c95b-39eb-a2c5-08b82a36409c',
covidSampleCollectionFormUuid: '371d19b6-485f-11ec-99cc-1fdd2d4e9d88',
covidLabOrderFormUuid: 'f5fb6bc4-6fc3-3462-a191-2fff0896bab3',
},
},
};
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,60 +5,60 @@
"tabName": "COVID Assessment",
"headerTitle": "COVID Assessment",
"displayText": "COVID Assessment",
"encounterType": "253a43d3-c99e-415c-8b78-ee7d4d3c1d54",
"encounterType": "covid_Assessment_EncounterUUID",
"columns": [
{
"id": "encounterDate",
"isDate": true,
"title": "Date of Assessment",
"concept": "160753AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA",
"concept": "covidEncounterDateTime_UUID",
"isLink": true
},
{
"id": "reasonsForTesting",
"title": "Reason for testing",
"concept": "ae46f4b1-c15d-4bba-ab41-b9157b82b0ce"
"concept": "covidReasonsForTestingConcep_UUID"
},
{
"id": "symptomatic",
"title": "Presentation",
"concept": "de3bc9b7-05b5-41b6-a38d-8d2eec646c4f"
"concept": "covidPatientStatusUUID"
},
{
"id": "outcome",
"title": "Outcome",
"concept": "a845f3e6-4432-4de4-9fff-37fa270b1a06"
"concept": "covidOutcomeUUID"
},
{
"id": "actions",
"title": "Actions",
"actionOptions": [
{
"formName": "COVID Case Form",
"formName": "CovidCaseFormName",
"package": "covid",
"label": "View Case",
"mode": "view"
},
{
"formName": "COVID Assessment Form",
"formName": "CovidAssessmentFormName",
"package": "covid",
"label": "View Assessment",
"mode": "view"
},
{
"formName": "COVID Assessment Form",
"formName": "CovidAssessmentFormName",
"package": "covid",
"label": "Edit Assessment",
"mode": "edit"
},
{
"formName": "COVID Case Form",
"formName": "CovidCaseFormName",
"package": "covid",
"label": "Edit Case",
"mode": "edit"
},
{
"formName": "COVID Outcome Form",
"formName": "CovidOutcomeFormName",
"package": "covid",
"label": "Add/Edit Outcome",
"mode": "edit"
Expand All @@ -72,18 +72,18 @@
},
"formList": [
{
"name": "COVID Assessment Form",
"name": "CovidAssessmentFormName",
"excludedIntents": ["COVID_LAB_ASSESSMENT_EMBED"],
"uuid": "f5fb6bc4-6fc3-3462-a191-2fff0896bab3"
"uuid": "covidAssessmentFormUuid"
},
{
"name": "COVID Case Form",
"uuid": "c0fd71bd-37bc-3c8d-b2ff-149c0ff4d6f0"
"name": "CovidCaseFormName",
"uuid": "covidCaseFormUuid"
},
{
"name": "COVID Outcome Form",
"name": "CovidOutcomeFormName",
"excludedIntents": ["COVID_OUTCOME_EMBED", "*"],
"uuid": "6515d898-439c-11ec-9103-238295f2dfd7"
"uuid": "covidOutcomeFormUuid"
}
]
}
Expand Down
Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
import React from 'react';
import { useConfig } from '@openmrs/esm-framework';
import { EncounterList, getMenuItemTabConfiguration } from '@ohri/openmrs-esm-ohri-commons-lib';
import caseAssessmentSchemaConfig from './case-assessment-schema-config.json';
import { configSchema } from '../../config-schema';

export const covidFormSlot = 'hts-encounter-form-slot';
export const covidEncounterRepresentation =
Expand All @@ -13,7 +15,8 @@ interface CovidAssessmentWidgetProps {
}

const CovidAssessment: React.FC<CovidAssessmentWidgetProps> = ({ patientUuid }) => {
const tabs = getMenuItemTabConfiguration(caseAssessmentSchemaConfig);
const config = useConfig();
const tabs = getMenuItemTabConfiguration(caseAssessmentSchemaConfig, config);

return (
<>
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -5,42 +5,42 @@
"tabName": "Vaccinations",
"headerTitle": "Vaccinations",
"displayText": "Vaccinations",
"encounterType": "5b37ce7a-c55e-4226-bdc8-5af04025a6de",
"encounterType": "covidVaccinationEncounterUUID",
"columns": [
{
"id": "vaccinationDate",
"isDate": true,
"title": "Vaccination Date",
"concept": "1410AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"
"concept": "covidVaccinationAdministeredConcept_UUID"
},
{
"id": "doseAdministered",
"title": "Vaccine Dose",
"concept": "6ec64cb3-e710-4d3e-9db4-38c135966a45"
"concept": "covidVaccinationDose_UUID"
},
{
"id": "vaccineSeries",
"title": "Vaccine Series",
"concept": "45b3959d-f897-4e01-b6e5-16ef6ae0a687"
"concept": "covidVaccineSeriesConcept_UUID"
},
{
"id": "covidVaccineType",
"title": "Vaccine Administered",
"concept": "e41fbe17-4aee-4a44-950b-6676d6e0ede2",
"secondaryConcept": "0cc868bd-e9dd-4b59-b278-f923afe22d82"
"concept": "covidVaccineAdministeredConcept_UUID",
"secondaryConcept": "covidVaccineConcept_UUID"
},
{
"id": "actions",
"title": "Actions",
"actionOptions": [
{
"formName": "COVID Vaccination Form",
"formName": "CovidVaccinationFormName",
"package": "covid",
"label": "View Details",
"mode": "view"
},
{
"formName": "COVID Vaccination Form",
"formName": "CovidVaccinationFormName",
"package": "covid",
"label": "Edit Form",
"mode": "edit"
Expand All @@ -54,8 +54,8 @@
},
"formList": [
{
"name": "COVID Vaccination Form",
"uuid": "3ae3a031-2e24-357d-81b3-205d5187090a"
"name": "CovidVaccinationFormName",
"uuid": "covidVaccinationFormUuid"
}
]
}
Expand Down
Original file line number Diff line number Diff line change
@@ -1,7 +1,9 @@
import React from 'react';
import { useConfig } from '@openmrs/esm-framework';
import { EncounterList, getMenuItemTabConfiguration } from '@ohri/openmrs-esm-ohri-commons-lib';

import covidVaccinationsSchemaConfig from './covid-vaccinations-schema.json';
import { configSchema } from '../../config-schema';

interface CovidVaccinationsWidgetProps {
patientUuid: string;
Expand All @@ -10,7 +12,8 @@ interface CovidVaccinationsWidgetProps {
export const covidFormSlot = 'hts-encounter-form-slot';

const CovidVaccinations: React.FC<CovidVaccinationsWidgetProps> = ({ patientUuid }) => {
const tabs = getMenuItemTabConfiguration(covidVaccinationsSchemaConfig);
const config = useConfig();
const tabs = getMenuItemTabConfiguration(covidVaccinationsSchemaConfig, config);

return (
<>
Expand Down
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