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Starting PrEP usage #204

Merged
merged 22 commits into from
Oct 17, 2024
Merged

Starting PrEP usage #204

merged 22 commits into from
Oct 17, 2024

Commits on Sep 23, 2024

  1. Moving PrEP usage code from PR #199.

    @pineapple-cat
    pineapple-cat committed Sep 23, 2024
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  2. Added basic PrEP usage unit test.

    @pineapple-cat
    pineapple-cat committed Sep 23, 2024
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Commits on Sep 25, 2024

  1. Updated FIXMEs after discussion + minor starting PrEP refactor.

    @pineapple-cat
    pineapple-cat committed Sep 25, 2024
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  2. Updated start date in PrEP usage test.

    @pineapple-cat
    pineapple-cat committed Sep 25, 2024
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Commits on Sep 26, 2024

  1. Added separate first start date columns for each PrEP type.

    @pineapple-cat
    pineapple-cat committed Sep 26, 2024
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Commits on Sep 27, 2024

  1. Added WIP for starting PrEP without explicit testing.

    @pineapple-cat
    pineapple-cat committed Sep 27, 2024
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Commits on Oct 1, 2024

  1. Added remaining column assignments to starting PrEP for the first time.

    @pineapple-cat
    pineapple-cat committed Oct 1, 2024
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  2. Updated starting PrEP unit test to include people not specifically te… 

    …sted to start PrEP.
    @pineapple-cat
    pineapple-cat committed Oct 1, 2024
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Commits on Oct 2, 2024

  1. Updated pregnancy unit tests for higher pregnancy probabilities and f… 

    …aster runtime.
    @pineapple-cat
    pineapple-cat committed Oct 2, 2024
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Commits on Oct 3, 2024

  1. Merge remote-tracking branch 'origin/development' into prep-usage

    @pineapple-cat
    pineapple-cat committed Oct 3, 2024
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  2. Switched all PrEP rankings to separate columns for congruency.

    @pineapple-cat
    pineapple-cat committed Oct 3, 2024
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Commits on Oct 7, 2024

  1. Refactored starting PrEP without explicit testing.

    @pineapple-cat
    pineapple-cat committed Oct 7, 2024
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  2. Increased some pregnancy test populations.

    @pineapple-cat
    pineapple-cat committed Oct 7, 2024
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Commits on Oct 8, 2024

  1. Moved a few data variables to yaml file.

    @pineapple-cat
    pineapple-cat committed Oct 8, 2024
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  2. Moved starting PrEP into its own function.

    @pineapple-cat
    pineapple-cat committed Oct 8, 2024
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  3. Added unit test for HIV false negative pop.

    @pineapple-cat
    pineapple-cat committed Oct 8, 2024
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Commits on Oct 9, 2024

  1. Divided probability to start PrEP by PrEP types.

    @pineapple-cat
    pineapple-cat committed Oct 9, 2024
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  2. Added test for different PrEP type start probabilities.

    @pineapple-cat
    pineapple-cat committed Oct 9, 2024
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Commits on Oct 14, 2024

  1. Fixed HIV false negatives by including diagnosis status.

    @pineapple-cat
    pineapple-cat committed Oct 14, 2024
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  2. Updated PrEP willingness test with more precise assertions.

    @pineapple-cat
    pineapple-cat committed Oct 14, 2024
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Commits on Oct 15, 2024

  1. Added HIV diagnosis and PrEP usage to evolve.

    @pineapple-cat
    pineapple-cat committed Oct 15, 2024
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  2. Changed starting PrEP to assume diagnosis has already occurred.

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    pineapple-cat committed Oct 15, 2024
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