Remove black list variants table query

Sage-Bionetworks · Jul 3, 2024 · 16d079b · 16d079b
1 parent dcec8d0
commit 16d079b
Showing 1 changed file with 1 addition and 5 deletions.
diff --git a/templates/dashboardTemplate.Rmd b/templates/dashboardTemplate.Rmd
@@ -260,11 +260,7 @@ if (is.null(this_bed)) {
 this_assays = as.character(unique(this_samples$SEQ_ASSAY_ID))
 this_mut <- getFileDf("data_mutations_extended.txt", releaseFiles)
 assay_infodf = getFileDf("assay_information.txt", releaseFiles)
-black_list_variants <- synTableQuery(
-  "select * from syn18459663 where filter_variant is true",
-  includeRowIdAndRowVersion = F
-)
-black_list_variantsdf = black_list_variants$asDataFrame()
+
 # this_cna <- getFileDf("data_CNA.txt", releaseFiles)
 #this_fus <- getFileDf("data_fusions.txt", releaseFiles)