Remove section on flagged mutations

templates/dashboardTemplate.Rmd

@@ -438,27 +438,6 @@ Files → Centers → [Center name] → Errors → failed_annotation
 
 View the version comment column in Synapse for your report to find the version associated with this release.
 
----
-
-## Flagged Mutations
-This is a count of how many flagged mutations a center has. Most of these variants are potential
-artifacts flagged by manual review of cBioPortal. Please inform Sage Bionetworks about:
-
-* Suggestions for variants that should be part of this list
-* Any variant shouldn't be part of this list
-
-```{r blacklist}
-blacklist_variants = paste(black_list_variantsdf$Hugo_Symbol,
-                           black_list_variantsdf$HGVSp_Short)
-subset_mut = this_mut[this_mut$Hugo_Symbol %in% black_list_variantsdf$Hugo_Symbol, ]
-subset_mut$blacklist = paste(subset_mut$Hugo_Symbol,
-                             subset_mut$HGVSp_Short)
-subset_mut = subset_mut[subset_mut$blacklist %in% blacklist_variants,]
-kable(table(subset_mut$blacklist, subset_mut$Center),
-      caption = "Blacklist variant count")
-```
-
-
 ---
 
 ## Distribution of Clinical Attributes