Cas3 motif gene ranking and motif finding tool

For the Cas3 project in Parts Group, Wellcome Sanger Institute

Environment

The exact conda environment is provided in the environment.yml file, which can be used to automatically make a conda environment with conda env create -f environment.yml. However, if you prefer to not use this method, the python3 packages needed are simply:

• numpy
• pandas
• pyfaidx

Configuration

Please paste the paths to relevant files into the config.json file, a detailed breakdown of the option to come soon.

Running

To run the tool, start in the main folder cd cas3-tool, and run python src.