For the Cas3 project in Parts Group, Wellcome Sanger Institute
The exact conda environment is provided in the environment.yml file, which can be used to automatically
make a conda environment with conda env create -f environment.yml.
However, if you prefer to not use this method, the python3 packages needed are simply:
- numpy
- pandas
- pyfaidx
Please paste the paths to relevant files into the config.json file, a detailed breakdown of the option to come soon.
To run the tool, start in the main folder cd cas3-tool, and run python src.