GenerateBaseline #11
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| name: GenerateBaseline | |
| on: | |
| workflow_dispatch: | |
| workflow_run: | |
| workflows: [ForecastUpload] | |
| types: | |
| - completed | |
| jobs: | |
| baseline_job: | |
| if: ${{ github.event.workflow_run.conclusion == 'success' && github.repository_owner == 'european-modelling-hubs' }} | |
| outputs: | |
| changed_files: ${{ steps.compute_baseline.outputs.baseline_file }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Checkout the python tools repo | |
| # ------------------------------------------- | |
| - name: checkout python tools repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'european-modelling-hubs/hub-tools' | |
| ref: 'main' | |
| path: './tools/' | |
| # Checkout the data repository | |
| # ------------------------------------------- | |
| - name: checkout data repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'european-modelling-hubs/flu-forecast-hub' | |
| ref: 'main' | |
| path: './repo/' | |
| # Run Pyton code | |
| # ------------------------- | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - run: pip install pandas==1.2.5 numpy==1.22.4 | |
| - name: compute baseline | |
| id: compute_baseline | |
| run: | | |
| python ./tools/code/quantile_baseline.py --hub_path ./repo --target_name "ILI incidence" --filename "ILI_incidence" --symmetrize True --nsamples 10000 --horizon 4 --team_abbr "respicast" --model_abbr "quantileBaseline" --submission_end_weekday 2 | |
| - name: Commit data repo changes | |
| uses: EndBug/add-and-commit@v7 | |
| with: | |
| cwd: './repo' | |
| message: "Update data storage" | |
| default_author: github_actions | |
| push: true | |
| call-persisting-wf: | |
| needs: baseline_job | |
| uses: european-modelling-hubs/flu-forecast-hub/.github/workflows/persist_changes.yml@main | |
| with: | |
| changes-list: ${{ needs.baseline_job.outputs.changed_files }} | |
| secrets: | |
| envPAT: ${{ secrets.GITHUB_TOKEN }} | |
| # # Save changes to artifact for later persisting | |
| # - name: Save changes to artifact | |
| # env: | |
| # changed_files: ${{ steps.compute_baseline.outputs.baseline_file }} | |
| # run: | | |
| # echo "{ \"pr-changes\" : \"$changed_files\" }" > pr_changes.json | |
| # - name: Upload changes | |
| # uses: actions/upload-artifact@v2 | |
| # with: | |
| # name: pr_changes | |
| # path: ./pr_changes.json | |