baseline.yml

name: GenerateBaseline 

on:

  workflow_dispatch:

  workflow_run:
    workflows: [ForecastUpload]
      
    types:
      - completed
    
jobs:

  baseline_job:
    if: ${{ github.event.workflow_run.conclusion == 'success' && github.repository_owner == 'european-modelling-hubs' }}
    outputs:
      changed_files:  ${{ steps.compute_baseline.outputs.baseline_file }}  
    
    runs-on: ubuntu-latest
    
    steps:

    # Checkout the python tools repo
    # -------------------------------------------      
    - name: checkout python tools repo
      uses: actions/checkout@v3
      with:
        token: ${{ secrets.GITHUB_TOKEN }}
        repository: 'european-modelling-hubs/hub-tools'
        ref: 'main'
        path: './tools/'

    # Checkout the data repository
    # -------------------------------------------      
    - name: checkout data repo
      uses: actions/checkout@v3
      with:
        token: ${{ secrets.GITHUB_TOKEN }}
        repository: 'european-modelling-hubs/flu-forecast-hub'
        ref: 'main'
        path: './repo/'
    
    # Run Pyton code
    # -------------------------
    - uses: actions/setup-python@v4
      with:
        python-version: '3.10' 
    
    - run: pip install pandas==1.2.5 numpy==1.22.4
    
    - name: compute baseline
      id: compute_baseline
      run: |
        python ./tools/code/quantile_baseline.py --hub_path ./repo --target_name "ILI incidence" --filename "ILI_incidence" --symmetrize True --nsamples 10000 --horizon 4 --team_abbr "respicast" --model_abbr "quantileBaseline" --submission_end_weekday 2

    - name: Commit data repo changes
      uses: EndBug/add-and-commit@v7
      with: 
          cwd: './repo'
          message: "Update data storage"
          default_author: github_actions
          push: true


  call-persisting-wf:
    needs: baseline_job
    uses: european-modelling-hubs/flu-forecast-hub/.github/workflows/persist_changes.yml@main
    with:
      changes-list: ${{ needs.baseline_job.outputs.changed_files }}

    secrets:
      envPAT: ${{ secrets.GITHUB_TOKEN }}      

    # # Save changes to artifact for later persisting 
    # - name: Save changes to artifact
    #   env:
    #     changed_files: ${{ steps.compute_baseline.outputs.baseline_file }}
    #   run: |
    #     echo "{ \"pr-changes\" : \"$changed_files\" }" > pr_changes.json
          
    # - name: Upload changes
    #   uses: actions/upload-artifact@v2
    #   with:
    #     name: pr_changes
    #     path: ./pr_changes.json