Jz parse dagitty

.gitignore

@@ -102,3 +102,4 @@ venv.bak/
 
 # mypy
 .mypy_cache/
+.Rproj.user

GRN_Analysis/.gitignore

@@ -0,0 +1,4 @@
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

GRN_Analysis/DS1.dagitty

@@ -0,0 +1,260 @@
+dag {
+rutR->rutC
+hybC->rutC
+slyB->rutC
+ddpC->rutC
+betI->rutC
+rutR->argA
+hybC->argA
+slyB->argA
+ddpC->argA
+betI->argA
+rutR->appC
+hybC->appC
+slyB->appC
+ddpC->appC
+betI->appC
+rutR->potF
+hybC->potF
+slyB->potF
+ddpC->potF
+betI->potF
+rutR->potH
+hybC->potH
+slyB->potH
+ddpC->potH
+betI->potH
+rutR->lldP
+hybC->lldP
+slyB->lldP
+ddpC->lldP
+betI->lldP
+rutR->rpsC
+hybC->rpsC
+slyB->rpsC
+ddpC->rpsC
+betI->rpsC
+rutR->argF
+hybC->argF
+slyB->argF
+ddpC->argF
+betI->argF
+ddpC->pagP
+betI->pagP
+slyB->treR
+ddpC->treR
+ddpC->argR
+betI->argR
+rutR->betT
+hybC->betT
+rutR->yeaH
+hybC->yeaH
+rutR->rutD
+hybC->rutD
+rutR->puuR
+hybC->puuR
+rutR->rpsJ
+hybC->rpsJ
+rutR->yhdW
+hybC->yhdW
+rutR->arcA
+hybC->arcA
+rutR->rutE
+hybC->rutE
+rutR->hybO
+hybC->hybO
+rutR->rplB
+hybC->rplB
+rutR->iraM
+hybC->iraM
+rutR->potI
+hybC->potI
+rutR->potG
+hybC->potG
+rutR->rplV
+hybC->rplV
+uvrA->rutR
+astC->rutR
+metL->rutR
+uvrA->hybC
+astC->hybC
+metL->hybC
+rutR->ddpA
+hybC->ddpA
+rutR->rstB
+hybC->rstB
+rutR->glnG
+hybC->glnG
+rutR->rutF
+hybC->rutF
+rutR->icd
+hybC->icd
+rutR->hybF
+hybC->hybF
+rutR->phoP
+hybC->phoP
+rutR->fadL
+hybC->fadL
+rutR->ddpD
+hybC->ddpD
+rutR->nemA
+hybC->nemA
+rutR->ddpF
+hybC->ddpF
+rutR->appA
+hybC->appA
+rutR->yeaG
+hybC->yeaG
+rutR->dcuC
+hybC->dcuC
+rutR->ackA
+hybC->ackA
+rutR->yhdZ
+hybC->yhdZ
+rutR->rutG
+hybC->rutG
+rutR->borD
+hybC->borD
+rutR->phoQ
+hybC->phoQ
+rutR->purD
+hybC->purD
+rutR->fadJ
+hybC->fadJ
+rutR->artM
+hybC->artM
+rutR->rutB
+hybC->rutB
+rutR->yhdY
+hybC->yhdY
+rutR->ybjG
+hybC->ybjG
+rutR->fadI
+hybC->fadI
+ddpC->artJ
+betI->artJ
+lldD->hisP
+ddpC->hisP
+betI->hisP
+lldD->mgtA
+ddpC->mgtA
+betI->mgtA
+lldD->fadA
+ddpC->fadA
+betI->fadA
+lldD->lldR
+ddpC->lldR
+betI->lldR
+rutR->astE
+hybC->astE
+rutR->argT
+hybC->argT
+rutR->puuD
+hybC->puuD
+rutR->artI
+hybC->artI
+fadB->artI
+rutR->astB
+hybC->astB
+fadB->astB
+rutR->hybA
+hybC->hybA
+fadB->hybA
+rutR->astA
+hybC->astA
+lldD->astA
+slyB->astA
+ddpC->astA
+betI->astA
+rutR->hybB
+hybC->hybB
+lldD->hybB
+slyB->hybB
+ddpC->hybB
+betI->hybB
+rutR->astD
+hybC->astD
+lldD->astD
+slyB->astD
+ddpC->astD
+betI->astD
+rutR->ybdN
+hybC->ybdN
+lldD->ybdN
+slyB->ybdN
+ddpC->ybdN
+betI->ybdN
+rutR->appB
+hybC->appB
+lldD->appB
+slyB->appB
+ddpC->appB
+betI->appB
+rutR->nemR
+hybC->nemR
+lldD->nemR
+slyB->nemR
+ddpC->nemR
+betI->nemR
+rutR->gmr
+hybC->gmr
+lldD->gmr
+slyB->gmr
+ddpC->gmr
+betI->gmr
+slyB->ddpC
+ddpC->fadR
+betI->fadR
+ddpC->argI
+betI->argI
+ddpC->rplD
+betI->rplD
+rutR->rpsS
+hybC->rpsS
+ddpC->rpsS
+betI->rpsS
+rutR->rplW
+hybC->rplW
+ddpC->rplW
+betI->rplW
+rutR->rpmC
+hybC->rpmC
+ddpC->rpmC
+betI->rpmC
+rutR->hybG
+hybC->hybG
+ddpC->hybG
+betI->hybG
+rutR->purH
+hybC->purH
+ddpC->purH
+betI->purH
+rutR->argD
+hybC->argD
+ddpC->argD
+betI->argD
+rutR->ydeA
+hybC->ydeA
+rutR->ddpX
+hybC->ddpX
+rutR->rutA
+hybC->rutA
+rutR->betA
+hybC->betA
+rutR->ddpB
+hybC->ddpB
+ddpC->treB
+betI->treB
+ddpC->carA
+betI->carA
+rutR->betB
+hybC->betB
+rutR->yrbL
+hybC->yrbL
+rutR->tpx
+hybC->tpx
+rutR->fepB
+hybC->fepB
+ddpC->hisQ
+betI->hisQ
+}