Jz parse dagitty #21
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Jz parse dagitty #21
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Adding all the R files related to conditional independence of a GRN.
Cleaned up the R scrips and files.
…N using existing data in SERGIO project (file name:GRN_Ecoli_ConditionalIndependence_sample size). 2) The HTML file with the output from the testing conditional independencies of Ecoli-GRN using existing data in SERGIO project 3) Calling Python in R to simulate data from SERGIO in R (file: GRN_Ecoli_ConditionalIndependence_sample size_simdata) Added the R files for, 1) Test conditional independencies of Ecoli-GRN using existing data in SERGIO project (file name:GRN_Ecoli_ConditionalIndependence_sample size). 2) The HTML file with the output from the testing conditional independencies of Ecoli-GRN using existing data in SERGIO project 3) Calling Python in R to simulate data from SERGIO in R (file: GRN_Ecoli_ConditionalIndependence_sample size_simdata)
…t conditional independence tests. added the r files to create a GRN from an interaction file and conduct conditional independence tests.
…es) (Rmd file and .R file named "GRN_Ecoli_ConditionalIndependence_samplesize". The html file inludes both the "code and the results (GRN_Ecoli_ConditionalIndependence_samplesize.html)
…results are exactly same as before. I think there is variability from cell types , and probably one data set may not be enough to come to a conclusion.
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