Pelahi askapingest

askapingest_sles12sp5/adios.cyg

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+##############################################################################
+# maali cygnet file for adios
+##############################################################################
+
+read -r -d '' MAALI_MODULE_WHATIS << EOF
+
+The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists 
+to describe the data in their code that may need to be written, read, or 
+processed outside of the running simulation. By providing an external to the 
+code XML file describing the various elements, their types, and how you wish 
+to process them this run, the routines in the host code (either Fortran or C) 
+can transparently change how they process the data.
+
+For more info see https://www.olcf.ornl.gov/center-projects/adios/
+
+EOF
+
+#list extra build options in MAALI_TOOL_BUILD_OPTIONS_AVAIL
+# adios can be built with either hdf5 or parallel hdf5
+ADIOS_USE_PARALLEL_HDF5=0
+ADIOS_USE_MPICH_ABI=0
+MAALI_TOOL_BUILD_OPTIONS_AVAIL=("ADIOS_USE_PARALLEL_HDF5=0:1 ADIOS_USE_MPICH_ABI=0:1")
+
+ADIOS_BUILD_CONFIG='--with-zlib --with-bzip2 --with-szip="${MAALI_SZIP_HOME}" CC=mpicc FC=mpif90 '
+MAALI_TOOL_PREREQ=" szip "
+if [[ ${MAALI_TOOL_MAJOR_VERSION} -ge 2 ]]; then
+    MAALI_TOOL_BUILD_PREREQ+=" cmake/3.19.1 "
+    ADIOS_BUILD_CONFIG='-DADIOS2_WITH_BZip2=ON -DADIOS2_USE_SZ=AUTO -DADIOS2_USE_MPI=ON CC=mpicc FC=mpif90 '
+fi
+
+# parse the build options, would be nice to make this a function 
+# the issue currently is the local scope of variables declared 
+if [[ ${#MAALI_TOOL_BUILD_OPTIONS[@]} -gt 0 ]]; then
+    for i in ${MAALI_TOOL_BUILD_OPTIONS[@]}
+    do
+        opt=(${i//=/ })
+        optname=${opt[0]}
+        optval=${opt[1]}
+        if [[ "$optname" -eq "ADIOS_USE_PARALLEL_HDF5" ]]; then
+            ADIOS_USE_PARALLEL_HDF5=$optval
+        fi
+        if [[ "$optname" -eq "ADIOS_USE_MPICH_ABI" ]]; then
+            ADIOS_USE_MPICH_ABI=$optval
+        fi
+    done
+fi
+
+#update build options if parallel build
+if [[ $ADIOS_USE_PARALLEL_HDF5 -eq 1 ]]; then
+    ADIOS_HDF5_BUILD_NAME="phdf5"
+    if [[ ${MAALI_TOOL_MAJOR_VERSION} -ge 2 ]]; then 
+        ADIOS_BUILD_CONFIG+=' -DADIOS2_USE_HDF5=ON -DHDF5_ROOT="${MAALI_HDF5_HOME}" '
+    else 
+        ADIOS_BUILD_CONFIG+=' --with-phdf5="${MAALI_HDF5_HOME}" '
+    fi 
+    MAALI_TOOL_PREREQ+=" hdf5/1.10.5-parallel-api-v110 "
+else
+    ADIOS_HDF5_BUILD_NAME="hdf5"
+    if [[ ${MAALI_TOOL_MAJOR_VERSION} -ge 2 ]]; then 
+        ADIOS_BUILD_CONFIG+=' -DADIOS2_USE_HDF5=ON -DHDF5_ROOT="${MAALI_HDF5_HOME}" '
+    else 
+        ADIOS_BUILD_CONFIG+=' --with-hdf5="${MAALI_HDF5_HOME}" '
+    fi
+    MAALI_TOOL_PREREQ+=" hdf5/1.10.5-c++-noparallel-api-v110 "
+fi
+if [[ $ADIOS_USE_MPICH_ABI -eq 1 ]]; then
+    ADIOS_MPI_BUILD_NAME="mpi-abi-mpich"
+    MAALI_TOOL_PREREQ+=" mvapich/2.3b "
+else
+    ADIOS_MPI_BUILD_NAME="mpi-abi-openmpi"
+    MAALI_TOOL_PREREQ+=" openmpi-ucx/4.0.3 "
+fi
+
+MAALI_TOOL_BUILD_OPTIONS_SUFFIX="-$ADIOS_HDF5_BUILD_NAME-$ADIOS_MPI_BUILD_NAME"
+
+# specify which compilers we want to build the tool with
+#MAALI_TOOL_COMPILERS="$MAALI_DEFAULT_COMPILERS"
+MAALI_TOOL_COMPILERS="gcc/8.3.0 gcc/5.5.0"
+MAALI_TOOL_CPU_TARGET="$MAALI_DEFAULT_CPU_TARGET"
+MAALI_TOOL_CUDA_COMPILERS="$MAALI_DEFAULT_CUDA_COMPILERS"
+if [[ $HDF_WITH_PARALLEL -eq 1 ]]; then
+  if [[ $MAALI_CUDA_BUILD -eq 1 ]] ; then
+    MAALI_TOOL_MPI_COMPILERS="$MAALI_DEFAULT_CUDAMPI_COMPILERS"
+  else
+    MAALI_TOOL_MPI_COMPILERS="$MAALI_DEFAULT_MPI_COMPILERS"
+    if [[ $ADIOS_USE_MPICH_ABI -eq 1 ]]; then
+      MAALI_TOOL_MPI_COMPILERS="mvapich/2.3b"
+    else  
+      MAALI_TOOL_MPI_COMPILERS="openmpi-ucx/4.0.3"
+    fi
+  fi
+fi
+
+# URL to download the source code from
+if [[ ${MAALI_TOOL_MAJOR_VERSION} -ge 2 ]]; then
+    MAALI_URL="https://github.com/ornladios/ADIOS2/archive/v${MAALI_TOOL_VERSION}.tar.gz"
+else 
+    MAALI_URL="http://users.nccs.gov/~pnorbert/adios-${MAALI_TOOL_VERSION}.tar.gz"
+fi
+
+# location we are downloading the source code to
+MAALI_DST="$MAALI_SRC/$MAALI_TOOL_NAME-$MAALI_TOOL_VERSION.tar.bz2"
+
+# where the unpacked source code is located
+MAALI_TOOL_BUILD_DIR="$MAALI_BUILD_DIR/$MAALI_TOOL_NAME-$MAALI_TOOL_VERSION$MAALI_TOOL_SUFFIX"
+
+MAALI_UNPACK_MKDIR=1
+
+# type of tool (eg. apps, devel, python, etc.)
+MAALI_TOOL_TYPE="devel"
+
+# add additional configure options
+MAALI_TOOL_CONFIGURE='$ADIOS_BUILD_CONFIG'
+
+# for auto-building module files
+MAALI_MODULE_SET_PATH=1
+MAALI_MODULE_SET_LD_LIBRARY_PATH=1
+MAALI_MODULE_SET_LIBRARY_PATH=1
+MAALI_MODULE_SET_MANPATH=1
+MAALI_MODULE_SET_CPATH=1
+MAALI_MODULE_SET_FPATH=1
+MAALI_MODULE_SET_FCPATH=1
+MAALI_MODULE_SET_ADIOS_DIR='$MAALI_APP_HOME'
+
+##############################################################################
+
+function maali_pre_build {
+  # move the files extracted from tar file to appropriate directory, remove tar made directory
+
+  if [[ ${MAALI_TOOL_MAJOR_VERSION} -ge 2 ]]; then
+        rmdir ${MAALI_TOOL_BUILD_DIR}/${MAALI_TOOL_NAME}-${MAALI_TOOL_VERSION}
+	mv $MAALI_TOOL_BUILD_DIR/ADIOS2-$MAALI_TOOL_VERSION ${MAALI_TOOL_BUILD_DIR}/${MAALI_TOOL_NAME}-${MAALI_TOOL_VERSION}
+  fi
+  mv $MAALI_TOOL_BUILD_DIR/$MAALI_TOOL_NAME-$MAALI_TOOL_VERSION/* $MAALI_TOOL_BUILD_DIR/
+  rm -rf $MAALI_TOOL_BUILD_DIR/$MAALI_TOOL_NAME-$MAALI_TOOL_VERSION/
+  cd "$MAALI_TOOL_BUILD_DIR"
+
+
+}
+
+##############################################################################
+
+function maali_cmake_build {
+  # for tools that use cmake
+  MAALI_CMAKE_PATH=$MAALI_TOOL_BUILD_DIR/
+  # allows late evaluation
+  MAALI_TOOL_CONFIGURE_EVAL=`eval echo "$MAALI_TOOL_CONFIGURE"`
+
+  # cmake likes to build in a director of it's own
+  maali_makedir "$MAALI_TOOL_BUILD_DIR/$MAALI_TOOL_NAME-build"
+  cd "$MAALI_TOOL_BUILD_DIR/$MAALI_TOOL_NAME-build"
+
+  maali_run "cmake -DCMAKE_INSTALL_PREFIX=$MAALI_INSTALL_DIR $MAALI_TOOL_CONFIGURE_EVAL $MAALI_CMAKE_PATH"
+  if [ $DEBUG ]; then
+    maali_run "make -j $MAALI_CORES VERBOSE=TRUE"
+  else
+    maali_run "make -j $MAALI_CORES"
+  fi
+  maali_run "make install"
+}
+
+##############################################################################

askapingest_sles12sp5/aocc.cyg

@@ -0,0 +1,127 @@
+##############################################################################
+# maali cygnet file for AOCC
+##############################################################################
+
+read -r -d '' MAALI_MODULE_WHATIS << EOF
+
+The AOCC compiler system is a high performance, production quality 
+code generation tool. The AOCC environment provides various options 
+to developers when building and optimizing C, C++, and Fortran 
+applications targeting 32-bit and 64-bit Linux® platforms. 
+The AOCC compiler system offers a high level of advanced optimizations, 
+multi-threading and processor support that includes global optimization, 
+vectorization, inter-procedural analyses, loop transformations, and code 
+generation. AMD also provides highly optimized libraries, which 
+extract the optimal performance from each x86 processor core when 
+utilized. The AOCC Compiler Suite simplifies and accelerates 
+development and tuning for x86 applications.
+
+For further information see https://developer.amd.com/amd-aocc/
+
+EOF
+
+# specify which compilers we want to build the tool with
+MAALI_TOOL_COMPILERS="clang/10.0.1"
+#MAALI_TOOL_COMPILERS="gcc/8.3.0"
+
+# specify the architectures we want to build the library on
+MAALI_TOOL_CPU_TARGET="$MAALI_DEFAULT_TOOL_CPU_TARGET"
+
+# URL to download the source code from
+# there is no way to download source in automated fashion as requires agreeing to a EULA
+MAALI_URL=""
+
+# location we are downloading the source code to
+# since the installation requires that two tar files are unpacked leave this empty 
+MAALI_DST=""
+
+# where the unpacked source code is located
+MAALI_TOOL_BUILD_DIR="$MAALI_BUILD_DIR/aocc-$MAALI_TOOL_VERSION.src"
+
+# type of tool (eg. apps, devel, python, etc.)
+MAALI_TOOL_TYPE="devel"
+
+# tool pre-requisites
+MAALI_TOOL_PREREQ=""
+
+# tool pre-requisites modules needed to install this new tool/package
+MAALI_TOOL_BUILD_PREREQ=""
+
+# for auto-building module files
+MAALI_MODULE_SET_PATH=1
+MAALI_MODULE_SET_LD_LIBRARY_PATH=1
+MAALI_MODULE_SET_LIBRARY_PATH=1
+MAALI_MODULE_SET_CPATH=1
+MAALI_MODULE_SET_CPLUS_INCLUDE_PATH=1
+MAALI_MODULE_SET_MANPATH=1
+MAALI_MODULE_SET_COMPILER='aocc'
+MAALI_MODULE_SET_COMPILER_VER='$MAALI_TOOL_VERSION'
+MAALI_MODULE_SET_CC='clang'
+MAALI_MODULE_SET_CXX='clang++-w'
+
+##############################################################################
+
+function maali_build {
+
+  mkdir -p $MAALI_TOOL_BUILD_DIR
+  cd $MAALI_TOOL_BUILD_DIR
+  mkdir -p ${MAALI_INSTALL_DIR}/lib/
+  mkdir -p ${MAALI_INSTALL_DIR}/lib32/
+  mkdir -p ${MAALI_INSTALL_DIR}/libexe/
+  mkdir -p ${MAALI_INSTALL_DIR}/include/
+  mkdir -p ${MAALI_INSTALL_DIR}/bin/
+  mkdir -p ${MAALI_INSTALL_DIR}/share/
+
+  # first unpack the compiler
+  tar xf ${MAALI_SRC}/aocc-compiler-${MAALI_TOOL_VERSION}.0.tar
+  mv aocc-compiler-${MAALI_TOOL_VERSION}.0 aocc
+  # then unpack the math libraries
+  tar xf ${MAALI_SRC}/aocl-linux-aocc-${MAALI_TOOL_VERSION}-4.tar.gz
+  mv aocl-linux-aocc-${MAALI_TOOL_VERSION}-4 aocl
+
+  # now install the amd optimised libraries to the install directory 
+  cd aocl
+  ./install.sh -t $(pwd)
+  cp -r ./${MAALI_TOOL_VERSION}/lib/* ${MAALI_INSTALL_DIR}/lib/
+  cp -r ./${MAALI_TOOL_VERSION}/include/* ${MAALI_INSTALL_DIR}/include/
+  cd ../
+
+  # for aocc compiler need to add the math library path to the LD_LIBRARY_PATH 
+  # and the LIBRARY_PATH
+  export LD_LIBRARY_PATH=${MAALI_INSTALL_DIR}/lib/:${LD_LIBRARY_PATH}
+  export LIBRARY_PATH=${MAALI_INSTALL_DIR}/lib/:${LIBRARY_PATH}
+
+  # also need to explicitly add the libm to the LIBRARY_PATH 
+  export LIBRARY_PATH=/usr/lib64:${LIBRARY_PATH}
+
+  # now install the compilers themselves
+  cd aocc 
+  # check that the prereqs are met and that all is well 
+  ./AOCC-prerequisites-check.sh
+  cd ../
+
+  cp -r aocc/bin/* ${MAALI_INSTALL_DIR}/bin/
+  cp -r aocc/lib/* ${MAALI_INSTALL_DIR}/lib/
+  cp -r aocc/lib32/* ${MAALI_INSTALL_DIR}/lib32/
+  cp -r aocc/libexe/* ${MAALI_INSTALL_DIR}/libexe/
+  cp -r aocc/include/* ${MAALI_INSTALL_DIR}/include/
+  cp -r aocc/share/* ${MAALI_INSTALL_DIR}/share/
+  rm -rf aocl
+  rm -rf aocc
+
+  # add a C++ wrapper to the amd optimised clang++ compiler to use the libc++ library
+  cd ${MAALI_INSTALL_DIR}/bin
+  echo "#! /bin/bash" >> clang++-w
+  echo "# " >> clang++-w
+  echo "# This file is wraps the clang C++ compiler so as to always use the libc++ library." >> clang++-w
+  echo "# Simple script to compile and/or link C++ programs." >> clang++-w
+  echo "#" >> clang++-w
+  echo "# Handling of command-line options:" >> clang++-w
+  echo "#   This is a little tricky because some options may contain blanks." >> clang++-w
+  echo "#   Currently all command line options are just forwarded to clang++ but it" >>clang++-w 
+  echo "#   it might be useful to add some handling like --showme" >> clang++-w
+  echo "" >> clang++-w
+  echo "# run the compiler" >> clang++-w
+  echo "clang++ -stdlib=libc++ \"\$@\"" >> clang++-w
+
+}

askapingest_sles12sp5/boost.cyg

@@ -0,0 +1,92 @@
+##############################################################################
+# maali cygnet file for Boost
+##############################################################################
+
+read -r -d '' MAALI_MODULE_WHATIS << EOF
+
+Boost provides free peer-reviewed portable C++ source libraries.
+
+We emphasize libraries that work well with the C++ Standard Library. Boost
+libraries are intended to be widely useful, and usable across a broad spectrum
+of applications. The Boost license encourages both commercial and
+non-commercial use.
+
+For further information see http://www.boost.org/
+
+EOF
+
+# Request only the latest GNU and Intel compilers to be used
+MAALI_TOOL_COMPILERS="$MAALI_DEFAULT_COMPILERS"
+
+# needed  for this URL
+MAALI_BOOST_VERSION=`echo $MAALI_TOOL_VERSION| sed -e 's/\./_/g'`
+
+# URL to download the source code from
+MAALI_URL="http://sourceforge.net/projects/$MAALI_TOOL_NAME/files/$MAALI_TOOL_NAME/$MAALI_TOOL_VERSION/"$MAALI_TOOL_NAME"_"$MAALI_BOOST_VERSION".tar.bz2/download"
+
+# location we are downloading the source code to
+MAALI_DST="$MAALI_SRC/"$MAALI_TOOL_NAME"_"$MAALI_BOOST_VERSION".tar.bz2"
+
+# where the unpacked source code is located
+MAALI_TOOL_BUILD_DIR="$MAALI_BUILD_DIR/"$MAALI_TOOL_NAME"_"$MAALI_BOOST_VERSION
+
+# type of tool (eg. apps, devel, python, etc.)
+MAALI_TOOL_TYPE="devel"
+
+# tool pre-requisites
+MAALI_TOOL_PREREQ="$MAALI_DEFAULT_PYTHON"
+
+# for auto-building module files
+MAALI_MODULE_SET_LD_LIBRARY_PATH=1
+MAALI_MODULE_SET_LIBRARY_PATH=1
+MAALI_MODULE_SET_CPATH=1
+MAALI_MODULE_SET_C_INCLUDE_PATH=1
+MAALI_MODULE_SET_CPLUS_INCLUDE_PATH=1
+MAALI_MODULE_SET_BOOST_ROOT='$MAALI_APP_HOME'
+
+##############################################################################
+
+function maali_build {
+
+  cd "$MAALI_TOOL_BUILD_DIR"
+
+#https://github.com/HIT-SCIR/pyltp/pull/193
+  if [ "$MAALI_TOOL_VERSION" == "1.66.0" ]; then
+    sed -i -e 's;return PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0;return (void *)(PyUnicode_Check(obj) ? _PyUnicode_AsString(obj) : 0);g' libs/python/src/converter/builtin_converters.cpp
+  fi
+
+  export MAALI_CORES=12
+  # Intel-compiler specifics
+  if [[ "$MAALI_COMPILER_NAME" == "intel"* ]]; then
+
+  if [ "$MAALI_TOOL_MINOR_VERSION" -ge 66 ]; then
+    maali_run "./bootstrap.sh --prefix=$MAALI_INSTALL_DIR --with-toolset=intel-linux"
+    maali_run "./b2 -j$MAALI_CORES install toolset=intel --prefix=$MAALI_INSTALL_DIR"
+  else
+    maali_run "./bootstrap.sh --prefix=$MAALI_INSTALL_DIR --with-toolset=intel-linux"
+    maali_run "./bjam -j$MAALI_CORES toolset=intel release"
+    maali_run "./bjam install --prefix=$MAALI_INSTALL_DIR"
+  fi
+
+  # GNU compiler specifics
+  else
+
+  if [ "$MAALI_TOOL_MINOR_VERSION" -ge 66 ]; then
+    maali_run "./bootstrap.sh --prefix=$MAALI_INSTALL_DIR --with-toolset=gcc"
+    maali_run "./b2 -j$MAALI_CORES install toolset=gcc --prefix=$MAALI_INSTALL_DIR"
+  else
+    maali_run "./bootstrap.sh --prefix=$MAALI_INSTALL_DIR --without-libraries=python"
+    maali_run "./bjam -j$MAALI_CORES toolset=gcc release"
+    maali_run "./bjam install --prefix=$MAALI_INSTALL_DIR"
+  fi
+
+  fi
+
+  if [ "$MAALI_TOOL_VERSION" == "1.64.0" ]; then
+    sed -i -e 's;#include <boost/serialization/array.hpp>;#include <boost/serialization/array_wrapper.hpp>;g;' $MAALI_INSTALL_DIR/include/boost/numeric/ublas/matrix.hpp
+    sed -i -e 's;#include <boost/serialization/array.hpp>;#include <boost/serialization/array_wrapper.hpp>;g;' $MAALI_INSTALL_DIR/include/boost/numeric/ublas/storage.hpp
+  fi
+
+}
+
+##############################################################################