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dwidenoise: Enhancements #3029

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dwidenoise: Enhancements #3029

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4424cb4
dwidenoise: Modularise kernel
Lestropie Nov 4, 2024
bf0f978
dwidenoise: First working version of spherical kernel
Lestropie Nov 5, 2024
02c18b5
dwidenoise: Further changes to kernels
Lestropie Nov 5, 2024
58d313d
dwidenoise: Check validity of block operations
Lestropie Nov 5, 2024
3c76457
dwidenoise: Un-template spatial kernels
Lestropie Nov 5, 2024
6ae5583
dwidenoise: Change code handling of estimator selection
Lestropie Nov 5, 2024
e3bb26b
dwidenoise: Multiple changes to kernel handling
Lestropie Nov 5, 2024
750cfd9
dwidenoise: Cleanups suggested by clang-tidy
Lestropie Nov 6, 2024
7c8fc04
dwidenoise: Fix -radius_ratio option
Lestropie Nov 6, 2024
239e994
dwidenoise: Further fixes for clang-tidy
Lestropie Nov 7, 2024
b66bf23
dwidenoise: Move noise estimate from member to functor scope
Lestropie Nov 7, 2024
4165276
dwidenoise: Change default spherical kernel size
Lestropie Nov 7, 2024
aec1d06
dwidenoise: Optimal shrinkage
Lestropie Nov 8, 2024
aee5c06
dwidenoise: Add new estimator
Lestropie Nov 11, 2024
f59b78d
dwidenoise: Add overcomplete local PCA
Lestropie Nov 13, 2024
0e015a2
dwidenoise: New option -weightedrank
Lestropie Nov 13, 2024
2e6b024
dwidenoise: Bulk move code to src/
Lestropie Nov 16, 2024
915b185
New command dwi2noise
Lestropie Nov 17, 2024
5d19ae0
dwidenoise: Separate members for input vs denoised data
Lestropie Nov 17, 2024
e6c81f3
dwidenoise & dwi2noise: Add subsampling capability
Lestropie Nov 21, 2024
b772559
dwi*noise: Multiple changes
Lestropie Nov 26, 2024
5630ecc
dwi*noise: Various fixes / changes
Lestropie Nov 30, 2024
bc33d4d
dwidenoise: Import pre-estimated noise level map
Lestropie Dec 1, 2024
304e33b
dwidenoise: Remove -mask option
Lestropie Dec 1, 2024
67c9015
dwidenoise: Fixes to optimal shrinkage / thresholding
Lestropie Dec 2, 2024
a680743
dwi*noise: New option -nonstationarity
Lestropie Dec 3, 2024
83ebb1f
dwidenoise: Add missing file for pre-estimated noise map
Lestropie Dec 4, 2024
bba4fe1
Non-linear phase demodulation
Lestropie Dec 4, 2024
125ea3d
dwidenoise: New option -fixed_rank
Lestropie Dec 6, 2024
593bd53
dwidenoise: Fixes to nonstationarity correction
Lestropie Dec 9, 2024
471be56
dwi*noise: Improve handling where estimator fails
Lestropie Dec 9, 2024
79e9c65
dwi*noise: Rename -nonstationarity -> -vst
Lestropie Dec 10, 2024
4416f12
mrfilter: Expose linear phase demodulation at command-line
Lestropie Dec 13, 2024
8a068a9
dwidenoise: Add demeaning
Lestropie Dec 15, 2024
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