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population_template: Fix multi-contrast registration #3018

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Errors in refactoring in cd33930 as part of #2678.

Python script tests do not currently include multi-contrast registration, nor do they include the "robust mass" initial alignment option. I will need to add some; some should go with #2916, others I will need to decide whether I'm going to take on #2800.

@Lestropie Lestropie added this to the 3.1.0 updates milestone Oct 4, 2024
@Lestropie Lestropie self-assigned this Oct 4, 2024
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github-actions bot commented Oct 4, 2024

clang-tidy review says "All clean, LGTM! 👍"

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