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dir* command modifications for fixed direction handling #3013

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Modifications to dirgen, dirflip and dirorder.

These are augmentations I made for the purpose of generating this dataset to produce this tool to validate #2917 / #3011. I need to be able to re-run this, so it would be convenient if it would make it to dev and resolve it against other changes.

Modifications to dirgen, dirflip and dirorder.
These modifications were made for the purpose of embedding a set of fixed directions at the head of a gradient table scheme, and only optimising what is to come after that set. This is a minimal set of changes required to achieve that purpose; while there are other commands that could hypothetically undergo comparable changes, these were only done for a specific experiment, and features such as multi-shell or multi-phase-encode handling were deemed to be unnecessary.
@Lestropie Lestropie self-assigned this Sep 26, 2024
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