labelconvert LUTs for Schaefer parcellations #2357
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name: checks | |
on: | |
pull_request: | |
types: [opened, synchronize] | |
branches: [ master, dev ] | |
merge_group: | |
types: [checks_requested] | |
branches: [ master ] | |
jobs: | |
linux-clang-build: | |
runs-on: ubuntu-latest | |
env: | |
CFLAGS: -Werror | |
QT_SELECT: qt5 | |
steps: | |
- uses: actions/checkout@v1 | |
- name: install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install clang libqt5opengl5-dev libqt5svg5-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev python3-distutils | |
- name: configure | |
run: ./configure -assert || { cat configure.log; false; } | |
- name: build | |
run: ./build -nowarnings -persistent -nopaginate || { cat build.log; false; } | |
- name: unit tests | |
run: ./run_tests units || { cat testing_units.log; false; } | |
- name: binary tests | |
run: ./run_tests binaries || { cat testing_binaries.log; false; } | |
- name: check command documentation | |
run: ./docs/generate_user_docs.sh && git diff --exit-code docs/ | |
linux-gcc-build: | |
runs-on: ubuntu-latest | |
env: | |
CXX: g++-9 | |
CFLAGS: -Werror | |
QT_SELECT: qt5 | |
steps: | |
- uses: actions/checkout@v1 | |
- name: install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install g++-9 libqt5opengl5-dev libqt5svg5-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev | |
- name: configure | |
run: ./configure -nooptim || { cat configure.log; false; } | |
- name: build | |
run: ./build -nowarnings -persistent -nopaginate || { cat build.log; false; } | |
macos-build: | |
runs-on: macos-latest | |
env: | |
CFLAGS: -Werror | |
PACKAGES: "qt5 eigen pkg-config fftw libpng" | |
steps: | |
- uses: actions/checkout@v1 | |
- name: install dependencies | |
run: | | |
brew update || brew update # https://github.com/Homebrew/brew/issues/2491#issuecomment-294207661 | |
brew install $PACKAGES || brew install $PACKAGES | |
brew link --force qt5 | |
- name: configure | |
run: ./configure -assert || { cat configure.log; false; } | |
- name: build | |
run: ./build -nowarnings -persistent -nopaginate || { cat build.log; false; } | |
- name: unit tests | |
run: ./run_tests units || { cat testing_units.log; false; } | |
- name: binary tests | |
run: ./run_tests binaries || { cat testing_binaries.log; false; } | |
windows-build: | |
runs-on: windows-latest | |
env: | |
CFLAGS: -Werror | |
MSYSTEM: MINGW64 | |
MSYSCON: defterm | |
CHERE_INVOKING: enabled_from_arguments | |
MSYS2_NOSTART: yes | |
steps: | |
- uses: actions/checkout@v1 | |
- name: fetch and install MSYS2 | |
run: bash -c 'curl -sL https://github.com/MRtrix3/MinGW/releases/download/1.0/msys2.tar.{0,1} | tar xf -' | |
- name: run qtbinpatcher | |
shell: cmd | |
run: msys64\msys2_shell.cmd -c "qtbinpatcher --qt-dir=$(dirname $(which qmake))" | |
- name: configure | |
shell: cmd | |
run: msys64\msys2_shell.cmd -c "./configure -assert || { cat configure.log; false; }" | |
- name: build | |
shell: cmd | |
run: msys64\msys2_shell.cmd -c "./build -nowarnings -persistent -nopaginate || { cat build.log; false; }" | |
- name: unit tests | |
shell: cmd | |
run: msys64\msys2_shell.cmd -c "./run_tests units || { cat testing_units.log; false; }" | |
- name: binary tests | |
shell: cmd | |
run: msys64\msys2_shell.cmd -c "./run_tests binaries || { cat testing_binaries.log; false; }" | |
secondary-checks: | |
runs-on: ubuntu-latest | |
env: | |
QT_SELECT: qt5 | |
steps: | |
- uses: actions/checkout@v1 | |
- name: install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install pylint python3-sphinx sphinx-rtd-theme-common python3-recommonmark python3-sphinx-rtd-theme python3-pip | |
pip3 install sphinx-notfound-page | |
- name: check syntax | |
run: ./check_syntax || { cat syntax.log; false; } | |
- name: pylint (Python 3) | |
run: | | |
echo "__version__ = 'pylint testing' #pylint: disable=unused-variable" > ./lib/mrtrix3/_version.py | |
PYTHON=python3 ./run_pylint || { cat pylint.log; false; } | |
- name: check copyright headers | |
run: ./update_copyright && git diff --exit-code | |
- name: check building of documentation | |
run: python3 -m sphinx -n -N -W -w sphinx.log docs/ tmp/ | |
- name: install build dependencies | |
run: sudo apt-get install python2 clang libqt5opengl5-dev libqt5svg5-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev | |
- name: check configure with Python 2 | |
run: python2 ./configure || { cat configure.log; false; } | |
- name: check build with Python 2 | |
run: python2 ./build -dryrun || { cat build.log; false; } | |
- name: check configure with Python 3 | |
run: python3 ./configure || { cat configure.log; false; } | |
- name: check build with Python 3 | |
run: python3 ./build -dryrun || { cat build.log; false; } |