ecSeq/template is a simple template for building a new project in Nextflow.

The workflow does .... with tool, producing results with are then ... with other tool. Final results are ... with final tool, and ...

See the output documentation for more details of the results.

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.

i. Install nextflow

ii. Install one of docker, singularity or conda

iii. Download the pipeline and test it on a minimal dataset with a single command

nextflow run ecseq/template -profile test,<docker|singularity|conda>

iv. Start running your own analysis!

nextflow run ecseq/template -profile <docker|singularity|conda> --input /path/to/input 

See the usage documentation for all of the available options when running the pipeline.

These scripts were originally written for use by Your Institute, by You (@your_username).