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Third group of cell ontology assignments #926

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merged 4 commits into from
Dec 3, 2024
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Third group of cell ontology assignments #926

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e7cbaeb
third group of ontology assignments
allyhawkins Dec 3, 2024
732b3b0
monocyte for OCPs
allyhawkins Dec 3, 2024
5b1781d
type 1 -> type 2
allyhawkins Dec 3, 2024
f86232a
Merge branch 'main' into allyhawkins/panglao-ontologies-3
allyhawkins Dec 3, 2024
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48 changes: 24 additions & 24 deletions analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -129,30 +129,30 @@ CL:0000178 Leydig cell Leydig cells
CL:1000909 kidney loop of Henle epithelial cell Loop of Henle cells
CL:0002326 luminal epithelial cell of mammary gland Luminal epithelial cells
CL:0002327 mammary gland epithelial cell Mammary epithelial cells
NA NA Meningeal cells
NA NA Merkel cells
NA NA Microfold cells
NA NA Microglia
NA NA Müller cells
NA NA Myeloid-derived suppressor cells
NA NA Myocytes
NA NA Myofibroblasts
NA NA Natural killer T cells
NA NA Neural stem/precursor cells
NA NA Neuroblasts
NA NA NK cells
NA NA Nuocytes
NA NA Oligodendrocyte progenitor cells
NA NA Osteoclast precursor cells
NA NA Oxyphil cells
NA NA Pancreatic progenitor cells
NA NA Parathyroid chief cells
NA NA Peri-islet Schwann cells
NA NA Principal cells
NA NA Proximal tubule cells
NA NA Pulmonary alveolar type I cells
NA NA Pulmonary alveolar type II cells
NA NA Pulmonary vascular smooth muscle cells
CL:0000708 leptomeningeal cell Meningeal cells
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I would capture this one in documentation (#924)

CL:0000242 Merkel cell Merkel cells
CL:0000682 M cell of gut Microfold cells
CL:0000129 microglial cell Microglia
CL:0000636 Mueller cell Müller cells
CL:0000889 myeloid suppressor cell Myeloid-derived suppressor cells
CL:0000746 cardiac muscle cell Myocytes
CL:0000186 myofibroblast cell Myofibroblasts
CL:0000814 NK lymphocyte Natural killer T cells
CL:0000047 neural stem cell Neural stem/precursor cells
CL:0000338 neuroblast (sensu Nematoda and Protostomia) Neuroblasts
CL:0000623 natural killer cell NK cells
CL:0001069 group 2 innate lymphoid cell Nuocytes
CL:0002453 oligodendrocyte precursor cell Oligodendrocyte progenitor cells
CL:0000576 monocyte Osteoclast precursor cells
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Flag for #924 -- I'm worried this one could actually get us into trouble!

CL:0002199 oxyphil cell of parathyroid gland Oxyphil cells
CL:0002351 progenitor cell of endocrine pancreas Pancreatic progenitor cells
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Flag for #924

CL:0000446 chief cell of parathyroid gland Parathyroid chief cells
CL:0002573 Schwann cell Peri-islet Schwann cells
CL:0005009 renal principal cell Principal cells
CL:0002306 epithelial cell of proximal tubule Proximal tubule cells
CL:0002062 pulmonary alveolar type 1 cell Pulmonary alveolar type I cells
CL:0002063 pulmonary alveolar type 2 cell Pulmonary alveolar type II cells
CL:0000359 vascular associated smooth muscle cell Pulmonary vascular smooth muscle cells
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Makes sense to me.

CL:0002068 Purkinje myocyte Purkinje fiber cells
CL:0000121 Purkinje cell Purkinje neurons
CL:0000598 pyramidal neuron Pyramidal cells
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