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fix sesameQCtoDF column subsetting #190

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adamtolnay wants to merge 1 commit into zwdzwd:devel from adamtolnay:fix-sesameQCtoDF-cols

adamtolnay commented Dec 3, 2024

This pull request fixes an issue with column subsetting in sesameQCtoDF.

When qcs is a list, sesameQCtoDF returns the three default columns.

qc <- openSesame("test", prep="", func=sesameQC_calcStats)
qc_df<- sesameQCtoDF(qc, cols=c("num_dtna","frac_dtna","num_dt"))
qc_df
                  IDAT frac_dt_cg  RGratio RGdistort
1  206129770003_R01C01  0.8423470 1.535159  1.336828
2  206129770003_R02C01  0.9325517 1.409389  1.271266
3  206129770003_R03C01  0.7275575 1.913057  1.147329

This can be fixed by passing cols to the recursive call to sesameQCtoDF

sesame_checkVersion()
SeSAMe requires matched versions of R, sesame, sesameData and ExperimentHub.
Here is the current versions installed:
R: 4.4.2
Bioconductor: 3.20
sesame: 1.24.0
sesameData: 1.24.0
ExperimentHub: 2.14.0


          fix sesameQCtoDF column subsetting

63181e1

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