update debug messages

zavolanlab · Jan 17, 2024 · b908930 · b908930
1 parent 31af8ec
commit b908930
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Showing 2 changed files with 5 additions and 6 deletions.
diff --git a/htsinfer/get_library_type.py b/htsinfer/get_library_type.py
@@ -128,9 +128,10 @@ def _evaluate_mate_relationship(
                     StatesTypeRelationship.split_mates
                 )
         elif (
-            self.library_source.file_1.short_name is not None and
+            self.library_source.file_1.short_name is not None or
             self.library_source.file_2.short_name is not None
         ):
+            LOGGER.debug("Determining mate relationship by alignment...")
             self.mapping.library_type.relationship \
                 = StatesTypeRelationship.not_available
             self.mapping.library_source = self.library_source
@@ -140,7 +141,8 @@ def _evaluate_mate_relationship(
         else:
             self.results.relationship = StatesTypeRelationship.not_available
             LOGGER.debug(
-                "Mate relationship cannot be determined."
+                "Sequence IDs and library source are not determined, "
+                "mate relationship cannot be inferred."
             )
 
     def _align_mates(self):

diff --git a/htsinfer/get_read_orientation.py b/htsinfer/get_read_orientation.py
@@ -79,11 +79,8 @@ def evaluate(self) -> ResultsOrientation:
             self.library_source.file_1.short_name is not None or
             self.library_source.file_2.short_name is not None
         ):
+            LOGGER.debug("Determining read relationship by alignment...")
             self.mapping.evaluate()
-        else:
-            LOGGER.debug(
-                "Read orientation cannot be determined."
-            )
 
         return self.process_alignments(star_dirs=self.mapping.star_dirs)