Merge branch 'main' into inline_chunkdata

zarr-developers · Apr 5, 2024 · 5733185 · 5733185
2 parents d27ba38 + 1fc3f0b
commit 5733185
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -22,7 +22,7 @@ requires-python = ">=3.9"
 dynamic = ["version"]
 dependencies = [
     "xarray",
-    "kerchunk",
+    "kerchunk==0.2.2",
     "pydantic",
     "packaging",
 ]

diff --git a/virtualizarr/kerchunk.py b/virtualizarr/kerchunk.py
@@ -54,24 +54,24 @@ def read_kerchunk_references_from_file(
 
     if filetype.name.lower() == "netcdf3":
         from kerchunk.netCDF3 import NetCDF3ToZarr
-        refs = NetCDF3ToZarr(filepath).translate()
+        refs = NetCDF3ToZarr(filepath, inline_threshold=0).translate()
 
     elif filetype.name.lower() == "netcdf4":
         from kerchunk.hdf import SingleHdf5ToZarr
 
-        refs = SingleHdf5ToZarr(filepath).translate()
+        refs = SingleHdf5ToZarr(filepath, inline_threshold=0).translate()
     elif filetype.name.lower() == "grib":
         # TODO Grib files should be handled as a DataTree object
         # see https://github.com/TomNicholas/VirtualiZarr/issues/11
         raise NotImplementedError(f"Unsupported file type: {filetype}")
     elif filetype.name.lower() == "tiff":
         from kerchunk.tiff import tiff_to_zarr
 
-        refs = tiff_to_zarr(filepath)
+        refs = tiff_to_zarr(filepath, inline_threshold=0)
     elif filetype.name.lower() == "fits":
         from kerchunk.fits import process_file
 
-        refs = process_file(filepath)
+        refs = process_file(filepath, inline_threshold=0)
     else:
         raise NotImplementedError(f"Unsupported file type: {filetype.name}")